PSI network

New dataset request

Please fill out the information below to request the addition of a new dataset to the Netzschleuder repository.

Necessary information

Dataset title

Plant Photosystem I excitation energy transfer network.

Dataset description

Weighted directed network of the light-harvesting Photosystem Ι (PSI) of the plant Pisum sativum. The nodes represent chromophores with different identities (i.e. chlorophyll a, chlorophyll b, β-carotene and derivates, lutein, violaxanthin), while edges represent FRET transfer between chromophores. The link directionality connecting nodes in the PSI network depends on the energy levels of the connected chromophores. The weights correspond to the FRET Efficiency between connected chromophores.

Dataset tags

Biological, Directed, Weighted

Upstream URL

PSI_graph.csv

If you wish to host the original dataset files in Netzschleuder, i.e. have it act as the main upstream source, please upload the dataset file(s) as attachments (or give a temporary URL) and indicate below:

• I am the owner of this dataset, and I wish the primary upstream dataset files to be hosted by Netzschleuder.

(Please do not tick the box above if you plan to host the dataset yourself in your own website. Whether or not the upstream hosting is done in a different format is irrelevant.)

Citation

Montepietra D., Bellingeri M., Ross A.M., Scotognella F. and Cassi D. 2020 "Modelling photosystem I as a complex interacting network" J. R. Soc. Interface

https://doi.org/10.1098/rsif.2020.0813

License

N/A

Observations

• The preferred file formats are gt, GraphML, and GML, but any other upstream format is also accepted. For any non-standard format, including a Python parsing script would be helpful.
• Please verify if the dataset entry can be found in ICON. If so, please check this box.