# -*- coding: utf-8 -*- # # graph-tool documentation build configuration file, created by # sphinx-quickstart on Sun Oct 26 18:29:16 2008. # # This file is execfile()d with the current directory set to its containing dir. # # The contents of this file are pickled, so don't put values in the namespace # that aren't pickleable (module imports are okay, they're removed # automatically). # # All configuration values have a default; values that are commented out # serve to show the default. import sys, os # If your extensions are in another directory, add it here. If the directory # is relative to the documentation root, use os.path.abspath to make it # absolute, like shown here. sys.path.append(os.path.abspath('.')) # General configuration # --------------------- # Add any Sphinx extension module names here, as strings. They can be extensions # coming with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = ['sphinx.ext.autodoc', 'sphinx.ext.doctest', 'sphinx.ext.intersphinx', 'mathjax', 'sphinx.ext.autosummary', 'sphinxext.numpydoc', 'sphinx.ext.extlinks'] mathjax_path = "MathJax/MathJax.js" # Add any paths that contain templates here, relative to this directory. templates_path = ['.templates'] # The suffix of source filenames. source_suffix = '.rst' # The encoding of source files. #source_encoding = 'utf-8' # The master toctree document. master_doc = 'index' # General information about the project. project = u'graph-tool' copyright = u'2011, Tiago de Paula Peixoto ' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The short X.Y version. from graph_tool import __version__ as gt_version version = gt_version.split()[0] # The full version, including alpha/beta/rc tags. release = gt_version.split()[0] # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. #language = None # There are two options for replacing |today|: either, you set today to some # non-false value, then it is used: #today = '' # Else, today_fmt is used as the format for a strftime call. #today_fmt = '%B %d, %Y' # List of documents that shouldn't be included in the build. #unused_docs = [] # List of directories, relative to source directory, that shouldn't be searched # for source files. exclude_trees = ['.build'] # The reST default role (used for this markup: `text`) to use for all documents. #default_role = None # If true, '()' will be appended to :func: etc. cross-reference text. #add_function_parentheses = True # If true, the current module name will be prepended to all description # unit titles (such as .. function::). #add_module_names = True # If true, sectionauthor and moduleauthor directives will be shown in the # output. They are ignored by default. #show_authors = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = 'sphinx' # doctest doctest_global_setup = \ r""" from matplotlib import rc from matplotlib import rcParams font_size=12 rcParams["figure.figsize"] = (4,3) rcParams["font.family"] = "serif" rcParams["font.serif"] = ["Palatino"] rcParams["font.size"] = font_size rcParams["axes.labelsize"] = font_size rcParams["xtick.labelsize"] = font_size rcParams["ytick.labelsize"] = font_size rcParams["legend.numpoints"] = 1 rcParams["legend.fontsize"] = "small" rcParams["lines.markersize"] = 4 rcParams["figure.subplot.right"] = 0.95 rcParams["figure.subplot.top"] = 0.95 rcParams["figure.subplot.right"] = 0.95 rcParams["figure.subplot.top"] = 0.95 rcParams["figure.subplot.left"] = 0.2 rcParams["figure.subplot.bottom"] = 0.2 rcParams["text.usetex"] = True rcParams["ps.usedistiller"] = "xpdf" rcParams["pdf.compression"] = 9 rcParams["ps.useafm"] = True rcParams["path.simplify"] = True rcParams["text.latex.preamble"] = ["\usepackage{times}", #"\usepackage{euler}", "\usepackage{amssymb}", "\usepackage{amsmath}"] from numpy import * import scipy import scipy.stats from math import * import numpy as np import graph_tool.all as gt """ # Options for HTML outputs # ----------------------- # The style sheet to use for HTML and HTML Help pages. A file of that name # must exist either in Sphinx' static/ path, or in one of the custom paths # given in html_static_path. # html_style = 'default.css' html_theme = "gt_theme" html_theme_path = ["."] # The name for this set of Sphinx documents. If None, it defaults to # " v documentation". #html_title = None # A shorter title for the navigation bar. Default is the same as html_title. #html_short_title = None # The name of an image file (relative to this directory) to place at the top # of the sidebar. #html_logo = None # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. html_favicon = "graph-icon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['.static'] # If not '', a 'Last updated on:' timestamp is inserted at every page bottom, # using the given strftime format. html_last_updated_fmt = '%b %d, %Y' # If true, SmartyPants will be used to convert quotes and dashes to # typographically correct entities. html_use_smartypants = True # Custom sidebar templates, maps document names to template names. #html_sidebars = {} # Additional templates that should be rendered to pages, maps page names to # template names. #html_additional_pages = {} # If false, no module index is generated. #html_use_modindex = True # If false, no index is generated. #html_use_index = True # If true, the index is split into individual pages for each letter. #html_split_index = False # If true, the reST sources are included in the HTML build as _sources/. html_copy_source = True # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. html_use_opensearch = 'http://projects.skewed.de/graph-tool/doc/' # If nonempty, this is the file name suffix for HTML files (e.g. ".xhtml"). #html_file_suffix = '' # Output file base name for HTML help builder. htmlhelp_basename = 'graph-tooldoc' # Options for LaTeX output # ------------------------ # Grouping the document tree into LaTeX files. List of tuples (source start # file, target name, title, author, document class [howto/manual]). latex_documents = [ ('index', 'graph-tool.tex', ur'graph-tool documentation', ur'Tiago de Paula Peixoto', 'manual'), ] latex_preamble = """ \setcounter{tocdepth}{2} """ latex_show_pagerefs = True latex_show_urls = False latex_paper_size = "a4" latex_logo = "blockmodel.pdf" latex_elements = { 'papersize': "a4paper", 'fontpkg': r"\usepackage{bookman}"} # Example configuration for intersphinx: refer to the Python standard library. intersphinx_mapping = {'python': ('http://docs.python.org', None), 'numpy': ('http://docs.scipy.org/doc/numpy', None), 'scipy': ('http://docs.scipy.org/doc/scipy/reference', None), 'matplotlib': ('http://matplotlib.sourceforge.net', None)} extlinks = {'ticket': ('http://projects.skewed.de/graph-tool/ticket/%s', 'ticket '), 'doi': ('http://dx.doi.org/%s', 'DOI: '), 'arxiv': ('http://arxiv.org/abs/%s', 'arXiv: ')} # autodoc_default_flags = ['members'] numpydoc_show_class_members = False autodoc_member_order = 'bysource'