Commits · release-2.39 · Tiago Peixoto / graph-tool

23 Jun, 2021 2 commits
- Bump version to 2.39 · dec169a3
  Tiago Peixoto authored Jun 23, 2021
  
  dec169a3
- Makefile.am: add missing contingency.hh · 78a18de6
  Tiago Peixoto authored Jun 23, 2021
  
  78a18de6
22 Jun, 2021 22 commits
- Bump version to 2.38 · 2afb7ae7
  Tiago Peixoto authored Jun 22, 2021
  
  2afb7ae7
- Fix debian build · b6c929f5
  Tiago Peixoto authored Jun 22, 2021
  
  b6c929f5
- Fix docker build · 70c28423
  Tiago Peixoto authored Jun 22, 2021
  
  70c28423
- Fix compilation with boost versions older than 1.76 · ca8ed481
  Tiago Peixoto authored Jun 22, 2021
  
  ca8ed481
- Graph.__setstate__(): call explicit __init__() · 3b1cbac6
  Tiago Peixoto authored Jun 22, 2021
```
This makes it easier to subclass Graph while chaning the __init__()
signature. This fixes issue #696.
```
  3b1cbac6
- Fix docstring tests · b601f401
  Tiago Peixoto authored Jun 22, 2021
  
  b601f401
- Remove stale reference to old bisection submodule · c9dcca6a
  Tiago Peixoto authored Jun 21, 2021
  
  c9dcca6a
- graph_io_binary.hh: suppress compilation warnings · 458bf830
  Tiago Peixoto authored Jun 21, 2021
  
  458bf830
- multilevel_mcmc: fix initial bracketing · a851ca15
  Tiago Peixoto authored Jun 21, 2021
  
  a851ca15
- Fix clang compilation errors · 14ad85a8
  Tiago Peixoto authored Jun 21, 2021
  
  14ad85a8
- CI: disable openmp with clang · 594ed6f2
  Tiago Peixoto authored Jun 21, 2021
  
  594ed6f2
- Fix missing copyright headers · 68ce16ce
  Tiago Peixoto authored Jun 21, 2021
  
  68ce16ce
- Add clique decomposition implementation · 24e32369
  Tiago Peixoto authored Jun 21, 2021
  
  24e32369
- Avoid multiple declarations of move_t · b95a253f
  Tiago Peixoto authored Jun 21, 2021
  
  b95a253f
- Fix graph_histogram.cc compilation · 08722cf7
  Tiago Peixoto authored Jun 21, 2021
  
  08722cf7
- multicanonical_equilibrate(): fix callback function · 518182a6
  Tiago Peixoto authored Jun 21, 2021
```
This fixes issue #700
```
  518182a6
- Fix mulicanonical_mcmc_sweep() with NestedBlockState · 6a2c8b3a
  Tiago Peixoto authored Jun 21, 2021
```
This fixes issue #699
```
  6a2c8b3a
- Fix docstrings · bab2be6b
  Tiago Peixoto authored Jun 21, 2021
  
  bab2be6b
- MCMC test cleanup · fdefb758
  Tiago Peixoto authored May 01, 2021
  
  fdefb758
- Implement nested_contiguous_map() · ea4ff28f
  Tiago Peixoto authored Jun 21, 2021
  
  ea4ff28f
- Remove dead multilevel code · ecd607db
  Tiago Peixoto authored Jun 21, 2021
  
  ecd607db
- Change continuous_map() to contiguous_map() · e4cb3500
  Tiago Peixoto authored Jun 15, 2021
  
  e4cb3500
21 Jun, 2021 14 commits
- Fix compilation errors and warnings with Boost 1.76 · ee5cd8e8
  Tiago Peixoto authored Jun 15, 2021
```
This fixes issue #703
```
  ee5cd8e8
- inference: cleanup deg_ops · bda49830
  Tiago Peixoto authored Jun 15, 2021
  
  bda49830
- Implement Gibbs moves for ModularityState · 5a3aada4
  Tiago Peixoto authored Jun 15, 2021
  
  5a3aada4
- inference: simplify random neighbor sampling · 43a0de90
  Tiago Peixoto authored Jun 15, 2021
  
  43a0de90
- Improve elist implementation · 90041be8
  Tiago Peixoto authored Jun 14, 2021
  
  90041be8
- Remove unneeded OpenMP locks · ca8b4bb7
  Tiago Peixoto authored Jun 14, 2021
  
  ca8b4bb7
- dynamic_sampler.hh: add update() and get_prob() · 78c7d0c2
  Tiago Peixoto authored Jun 14, 2021
  
  78c7d0c2
- Refactor mutilevel MCMC inference · f804c544
  Tiago Peixoto authored Jun 15, 2021
```
This moves the entire algorithm into C++, and includes a faster
initialization heuristic.
```
  f804c544
- generate_knn(): fix docstring · 498e63c3
  Tiago Peixoto authored Jun 07, 2021
  
  498e63c3
- merge_split: do not restrict single-node moves to current hierarchy · 4c9359ac
  Tiago Peixoto authored May 13, 2021
  
  4c9359ac
- Release the GIL during MCMC sweeps · 08c38f3f
  Tiago Peixoto authored May 13, 2021
  
  08c38f3f
- Add GILRelease support to release the GIL as appropriate · 6e87fc05
  Tiago Peixoto authored May 13, 2021
  
  6e87fc05
- reduced_mutual_information(): fix docstring w.r.t. normalization · e6b9d702
  Tiago Peixoto authored May 02, 2021
  
  e6b9d702
- Histogram: implement conditional histograms · cd8ea9e3
  Tiago Peixoto authored May 02, 2021
  
  cd8ea9e3
15 Jun, 2021 2 commits
- Implement Bayesian histogram inference · ca5486a9
  Tiago Peixoto authored May 02, 2021
  
  ca5486a9
- planted_partition: fix MCMC detailed balance · d5450d85
  Tiago Peixoto authored May 01, 2021
  
  d5450d85