Commits · ed348374772c0254730556ee431a3d1c878b21d1 · Tiago Peixoto / graph-tool

11 Mar, 2018 5 commits
- Fix doctests · ed348374
  Tiago Peixoto authored Mar 11, 2018
  
  ed348374
- Fix compilation warning · 669e3448
  Tiago Peixoto authored Mar 11, 2018
  
  669e3448
- Fix issue with motif_significance() · 5c370c56
  Tiago Peixoto authored Mar 10, 2018
```
This fixes issue #444.
```
  5c370c56
- Sphinx cleanup and docs update · 00de67ff
  Tiago Peixoto authored Mar 08, 2018
  
  00de67ff
- inference.blockmodel: Improve nested SBM equilibration · 4f0c7fe6
  Tiago Peixoto authored Feb 10, 2018
```
This modifies the MCMC code to allow simultaneous update of
all hierarchy levels, improving equilibration speed.
```
  4f0c7fe6
10 Mar, 2018 1 commit
- Fix docstrings · 749572d8
  Tiago Peixoto authored Feb 14, 2018
  
  749572d8
14 Feb, 2018 5 commits
- inference: Add parameter r to TemperingState · 50b7f803
  Tiago Peixoto authored Feb 14, 2018
  
  50b7f803
- Fix compilation problem with clang · afd7243a
  Tiago Peixoto authored Feb 14, 2018
  
  afd7243a
- inference: Fix problem with coupled states · 35b3bf30
  Tiago Peixoto authored Feb 14, 2018
  
  35b3bf30
- Update copyright date · 8f16e8ff
  Tiago Peixoto authored Feb 11, 2018
  
  8f16e8ff
- inference: Implement code for uncertain networks · d25f8d92
  Tiago Peixoto authored Dec 19, 2017
  
  d25f8d92
11 Feb, 2018 1 commit
- inference: Cleanup propagate delta · 2d5051a9
  Tiago Peixoto authored Feb 11, 2018
  
  2d5051a9
10 Feb, 2018 2 commits
- inference: Slightly improve entry computation performance · f606acc2
  Tiago Peixoto authored Feb 10, 2018
  
  f606acc2
- inference: Fix issues with overlapping SBM and self-loops · e7363032
  Tiago Peixoto authored Jan 25, 2018
  
  e7363032
01 Feb, 2018 24 commits
- inference: Implement 'bfield' parameter · 54fa4532
  Tiago Peixoto authored Jan 15, 2018
  
  54fa4532
- inference: Fix issue with overlapping groups and self-loops · ecb5088e
  Tiago Peixoto authored Jan 20, 2018
  
  ecb5088e
- Fix compilation issue with clang · 19d1b8d8
  Tiago Peixoto authored Jan 20, 2018
  
  19d1b8d8
- Disambiguate between is_directed_ metafunction and is_directed() · f22bdb74
  Tiago Peixoto authored Jan 18, 2018
```
This fixes compilation with older GCC versions (ca. 5.0.0).
```
  f22bdb74
- inference: Cosmetic fix to log_q_approx() · d9ddaf60
  Tiago Peixoto authored Jan 15, 2018
  
  d9ddaf60
- inference: Improve block entry delta computation · 5bf396b3
  Tiago Peixoto authored Jan 13, 2018
  
  5bf396b3
- inference: Implement parallel sweeps for TemperingState with NestedBlockState · f44e89c4
  Tiago Peixoto authored Jan 04, 2018
  
  f44e89c4
- inference: Improve caching of lgamma()/log()/xlogx() · 5369eb34
  Tiago Peixoto authored Jan 04, 2018
  
  5369eb34
- inference: Delete unused block edges · a3c332d0
  Tiago Peixoto authored Jan 04, 2018
  
  a3c332d0
- inference: Reset m_entries and skip no-op virtual move · fe8b6724
  Tiago Peixoto authored Jan 04, 2018
  
  fe8b6724
- inference: Add self-loops and parallel edges to test_inference.py · 536b3c3b
  Tiago Peixoto authored Jan 20, 2018
  
  536b3c3b
- graph_blockmodel_elist.hh: Clear empty buckets · 79190e65
  Tiago Peixoto authored Jan 04, 2018
  
  79190e65
- dynamic_sampler.hh: Fix rebuild() · 385e8f86
  Tiago Peixoto authored Jan 04, 2018
  
  385e8f86
- inference: Implement parallel sweeps for TemperingState · 621322fb
  Tiago Peixoto authored Jan 03, 2018
  
  621322fb
- inference: Fix multiflip mcmc probabilities · 69b74660
  Tiago Peixoto authored Jan 03, 2018
```
This also makes niter correspond to number of sweeps
```
  69b74660
- Remove superfluous template parameter from parallel loop helpers · 68989431
  Tiago Peixoto authored Jan 03, 2018
  
  68989431
- inference: Restrict temperatures to priors only in TemperingState · 92794ce6
  Tiago Peixoto authored Dec 29, 2017
  
  92794ce6
- inference: Implement beta_dl parameter · d226ac61
  Tiago Peixoto authored Dec 29, 2017
```
This also re-organizes entropy() w.r.t. entropy_args.
```
  d226ac61
- inference: Return number of attempted moves for mcmc sweeps · 1c48aec8
  Tiago Peixoto authored Dec 26, 2017
  
  1c48aec8
- inference: Improve partition update · 1c155fb7
  Tiago Peixoto authored Dec 26, 2017
  
  1c155fb7
- Force-inline degree selectors · 25200e72
  Tiago Peixoto authored Dec 19, 2017
  
  25200e72
- Cosmetic improvements to Sampler and DynamicSampler · 72e74070
  Tiago Peixoto authored Dec 19, 2017
  
  72e74070
- Improve BlockState.multiflip_mcmc() move proposals · 7bb82a5b
  Tiago Peixoto authored Dec 26, 2017
  
  7bb82a5b
- Fix inconsistent degree()/in_degree()/in_neighbours() semantics for undirected graphs · 9138901a
  Tiago Peixoto authored Feb 01, 2018
  
  9138901a
27 Jan, 2018 1 commit
- Fix degree() for filtered undirected graphs · 977b4516
  Tiago Peixoto authored Jan 27, 2018
```
This fixes issue #435
```
  977b4516
22 Nov, 2017 1 commit
- urn_sampler.hh: Fix wrong return type for size() · 635b9675
  Tiago Peixoto authored Nov 22, 2017
  
  635b9675