Commits · ebe35be53742b906d758c9723d181636f7d3daca · Tiago Peixoto / graph-tool · GitLab

02 Mar, 2020 22 commits
- Improve numpy binding to boost::multi_array · ebe35be5
  Tiago Peixoto authored Jan 23, 2020
  
  ebe35be5
- graph_adjacency.hh: force inlining of edge iterator dereferencing · 6a5b5703
  Tiago Peixoto authored Jan 07, 2020
  
  6a5b5703
- inference: NestedBlockState constructor defaults to sampling=True · 2a175140
  Tiago Peixoto authored Jan 07, 2020
  
  2a175140
- inference: speedup addition of new groups · 8d546347
  Tiago Peixoto authored Jan 07, 2020
  
  8d546347
- Improve test_inference_mcmc.py · 85d8c6c9
  Tiago Peixoto authored Jan 07, 2020
  
  85d8c6c9
- Implement VICenterState · 48b231bd
  Tiago Peixoto authored Jan 07, 2020
  
  48b231bd
- inference: optimize multiflip_mcmc() by disabling uncessary edge list updates · 550ab951
  Tiago Peixoto authored Jan 07, 2020
  
  550ab951
- Switch to C++ syntax for function attributes · bf0e2475
  Tiago Peixoto authored Jan 07, 2020
  
  bf0e2475
- inference: fix split-merge bias in multiflip MCMC · 161d5214
  Tiago Peixoto authored Jan 02, 2020
  
  161d5214
- inference: modify LatentMultigraphBlockState.collect_marginal() to gather multiedges · 1cc4bfb1
  Tiago Peixoto authored Jan 01, 2020
  
  1cc4bfb1
- inference: Add LatentMultigraphBlockState as a wrapper to UncertainBlockState · daf7502b
  Tiago Peixoto authored Jan 01, 2020
  
  daf7502b
- inference: fix clabel enforcement in mcmc/multiflip_mcmc · 4822ba5b
  Tiago Peixoto authored Dec 29, 2019
  
  4822ba5b
- inference: fix mergesplit with clabel in multflip_mcmc_sweep() · 3ca7df5f
  Tiago Peixoto authored Dec 27, 2019
  
  3ca7df5f
- inference: add scatter stage split to multiflip_mcmc · de8556fc
  Tiago Peixoto authored Dec 14, 2019
  
  de8556fc
- inference: preserve pclabel in mcmc · 8918329f
  Tiago Peixoto authored Dec 14, 2019
  
  8918329f
- PropertyMap: fix pickle backwards compatibility · 1d780746
  Tiago Peixoto authored Dec 13, 2019
  
  1d780746
- Fix typo in inference HOWTO · 91954a2d
  Tiago Peixoto authored Dec 11, 2019
  
  91954a2d
- inference: prevent clabel invalidation in multiflip_mcmc_sweep() · 72cb613d
  Tiago Peixoto authored Dec 11, 2019
  
  72cb613d
- inference: add random imbalance to split staging in multiflip_mcmc_sweep() · 6bffcc02
  Tiago Peixoto authored Dec 10, 2019
  
  6bffcc02
- hierarchy_minimize(): Fix NameError when the caller supplies a hierarchy that... · 8062aa44
  Stuart Berg authored Jan 30, 2020 and Tiago Peixoto committed Mar 02, 2020
```
hierarchy_minimize(): Fix NameError when the caller supplies a hierarchy that is missing the top level
```
  8062aa44
- Fix autoconf detection of CGAL 5 · 95c0d9f0
  Tiago Peixoto authored Mar 02, 2020
```
This fixes issue #625
```
  95c0d9f0
- Add missing 'raise' in group_vector_property() · 57793779
  Tiago Peixoto authored Mar 02, 2020
```
This fixes issue #633
```
  57793779
01 Mar, 2020 1 commit
- configure: workaround for boost 1.72 coroutine bug · 9aeba521
  Tiago Peixoto authored Feb 17, 2020
  
  9aeba521
22 Nov, 2019 2 commits
- test_inference_mcmc: change figure size · ed3d3c25
  Tiago Peixoto authored Nov 22, 2019
  
  ed3d3c25
- inference: refactor multiflip MCMC · b694522e
  Tiago Peixoto authored Nov 22, 2019
  
  b694522e
27 Oct, 2019 1 commit
- Fix swap counting in TemperingState · 080938d8
  Tiago Peixoto authored Oct 27, 2019
  
  080938d8
21 Oct, 2019 7 commits
- Add option 'window' and 'return_window' to interactive_window() · cdcddcc4
  Tiago Peixoto authored Oct 20, 2019
```
This makes it easier to do interactive animations, e.g. when using IPython.
```
  cdcddcc4
- Add internal property map information to Graph.__repr__() · 6a62cc4b
  Tiago Peixoto authored Oct 20, 2019
  
  6a62cc4b
- Implement random_shortest_path() and count_shortest_paths() · 5a5a9a57
  Tiago Peixoto authored Oct 20, 2019
  
  5a5a9a57
- blockmodel: add 'recombine' move to multiflip_mcmc() · 12691b83
  Tiago Peixoto authored Oct 13, 2019
  
  12691b83
- blockmodel: add if constexpr · 95dad5c7
  Tiago Peixoto authored Oct 21, 2019
  
  95dad5c7
- blockmodel: Fix issue with OverlapBlockState · 53fe126e
  Tiago Peixoto authored Oct 21, 2019
  
  53fe126e
- TemperingState: count swap attempts and improve swap performance · a7a220ec
  Tiago Peixoto authored Oct 21, 2019
  
  a7a220ec
20 Oct, 2019 4 commits
- blockmodel: avoid copying of entropy_args_t · 775878d7
  Tiago Peixoto authored Oct 01, 2019
  
  775878d7
- blockmodel: change set_blocks() to set_state() · 2fe5bab4
  Tiago Peixoto authored Sep 27, 2019
  
  2fe5bab4
- test_inference_mcmc.py: add diverse initializations · c2133547
  Tiago Peixoto authored Sep 26, 2019
  
  c2133547
- blockmodel: modify verbose information · 3797adfb
  Tiago Peixoto authored Sep 26, 2019
  
  3797adfb
22 Sep, 2019 1 commit
- blockmodel: simplify random neighbor sampling · 822db1f2
  Tiago Peixoto authored Sep 22, 2019
  
  822db1f2
17 Sep, 2019 2 commits
- blockmodel: small tweaks to egroups and forced inlining · 8477c7ef
  Tiago Peixoto authored Sep 17, 2019
  
  8477c7ef
- blockmodel: performance improvements to neighbor sampler · a7496657
  Tiago Peixoto authored Sep 17, 2019
  
  a7496657