Commits · df42fadcbd609884470455da86fbf371b811fb2e · Tiago Peixoto / graph-tool

02 May, 2016 2 commits
- inference: fix bug with pickling BlockState · df42fadc
  Tiago Peixoto authored May 02, 2016
```
Make sure to preserve "ignore_degrees" even when the values are
non-Boolean (i.e. 2).
```
  df42fadc
- inference: fix blockmodel entropy for weighted graphs · 5b21cc1e
  Tiago Peixoto authored May 02, 2016
  
  5b21cc1e
01 May, 2016 2 commits
- inference: improve terminology use · f78f5614
  Tiago Peixoto authored May 01, 2016
  
  f78f5614
- community_old: guarantee symbols from 'inference' module are present · a50e61f3
  Tiago Peixoto authored May 01, 2016
```
This fixes issue #296.
```
  a50e61f3
27 Apr, 2016 1 commit
- Remove i386 build tests · 79d32bcc
  Tiago Peixoto authored Apr 27, 2016
  
  79d32bcc
24 Apr, 2016 1 commit
- planar_layout(): fix link to BGL documentation · b24556fd
  Tiago Peixoto authored Apr 24, 2016
  
  b24556fd
22 Apr, 2016 2 commits
- Massive OpenMP reorganization · e2de443b
  Tiago Peixoto authored Apr 22, 2016
```
Now algorithms rely more on parallel_{vertex/edge}_loop() and global
the paralellization threshold is honored.
```
  e2de443b
- Implement all_circuits() · 8783af44
  Tiago Peixoto authored Apr 21, 2016
```
This fixes issue #191
```
  8783af44
21 Apr, 2016 2 commits
- numpy_bind.hh: some improvements · da47282a
  Tiago Peixoto authored Apr 21, 2016
  
  da47282a
- is_bipartite(): add option 'find_odd_cycle' · d8bfcd42
  Tiago Peixoto authored Apr 21, 2016
  
  d8bfcd42
20 Apr, 2016 3 commits
- Change default in MulticanonicalState.get_flatness() · eb8e7f10
  Tiago Peixoto authored Apr 20, 2016
  
  eb8e7f10
- Implement draw.planar_layout() · 3805add7
  Tiago Peixoto authored Apr 20, 2016
  
  3805add7
- tsp_tour(): raise exception for directed graphs · a3eae6a3
  Tiago Peixoto authored Apr 20, 2016
```
This closes issue #293
```
  a3eae6a3
19 Apr, 2016 1 commit
- Fix typo bug in mcmc_anneal() · 91843211
  Tiago Peixoto authored Apr 19, 2016
  
  91843211
18 Apr, 2016 1 commit
- test_inference_mcmc.py: increase equilibration time · 2c1bc95f
  Tiago Peixoto authored Apr 18, 2016
  
  2c1bc95f
17 Apr, 2016 3 commits
- test_inference_mcmc.py: Switch to a smaller network to guarantee speedy equilibration · 7c0c4ac7
  Tiago Peixoto authored Apr 17, 2016
  
  7c0c4ac7
- MulticanonicalState: fix issue with histogram flat · 7b4b5618
  Tiago Peixoto authored Apr 17, 2016
  
  7b4b5618
- test_inference_mcmc.py: increase statistics · 05becca9
  Tiago Peixoto authored Apr 17, 2016
  
  05becca9
16 Apr, 2016 7 commits
- inference: make use of uniform_sample() · 6c3d1149
  Tiago Peixoto authored Apr 17, 2016
  
  6c3d1149
- test_inference_mcmc.py: decrease probability of false negatives · 95e1e194
  Tiago Peixoto authored Apr 16, 2016
  
  95e1e194
- test_inference_mcmc.py: include Gibbs sampling · b4e25c3d
  Tiago Peixoto authored Apr 16, 2016
  
  b4e25c3d
- Bump version to 2.17dev · e837dcc3
  Tiago Peixoto authored Apr 16, 2016
  
  e837dcc3
- Bump version to 2.16 · 386af122
  Tiago Peixoto authored Apr 16, 2016
  
  386af122
- Fix bug in BlockState.{remove/add}_vertex() · fc5f379c
  Tiago Peixoto authored Apr 16, 2016
  
  fc5f379c
- Documentation and test fixes · 9cc5cb2f
  Tiago Peixoto authored Apr 16, 2016
  
  9cc5cb2f
15 Apr, 2016 3 commits
- Bump version to 2.15 · 0dc50885
  Tiago Peixoto authored Apr 16, 2016
  
  0dc50885
- inference: implement extensive detailed balance tests · 8122cdcf
  Tiago Peixoto authored Apr 15, 2016
  
  8122cdcf
- inference: fix bug in detailed balance enforcement · 2f3b46a9
  Tiago Peixoto authored Apr 15, 2016
  
  2f3b46a9
14 Apr, 2016 3 commits
- multicanonical_equilibrate(): small improvements · 2b0a9da7
  Tiago Peixoto authored Apr 14, 2016
  
  2b0a9da7
- multicanonical_equilibrate(): add "allow_gaps" option · 2085f45a
  Tiago Peixoto authored Apr 14, 2016
  
  2085f45a
- inference: fix potential issue with get_move_prob() · 0aee04a4
  Tiago Peixoto authored Apr 14, 2016
  
  0aee04a4
13 Apr, 2016 4 commits
- Improve docstrings · 952d299b
  Tiago Peixoto authored Apr 13, 2016
  
  952d299b
- Implement BlockState.exhaustive_sweep() · 1475dc43
  Tiago Peixoto authored Apr 13, 2016
  
  1475dc43
- Allow for multiple simultaneous vertex movements in BlockState.move_vertex() · 30e6b8a0
  Tiago Peixoto authored Apr 13, 2016
  
  30e6b8a0
- Fix python-exposed boost::coroutine iteration · 2dfe4f33
  Tiago Peixoto authored Apr 13, 2016
```
This preserves the synchrony between global states and the iteration
sequence.
```
  2dfe4f33
12 Apr, 2016 3 commits
- inference: implement stricter checking for unexpected keyword arguments · 8037d8d5
  Tiago Peixoto authored Apr 12, 2016
  
  8037d8d5
- graph_distance_sampled.hh: improve performance · 8eef438b
  Tiago Peixoto authored Apr 12, 2016
  
  8eef438b
- Fix bug in GraphAdaptor's in_edges() · 0c92adbd
  Tiago Peixoto authored Apr 12, 2016
  
  0c92adbd
11 Apr, 2016 2 commits
- Improve iteration over out-/in-neighbours · 936e7260
  Tiago Peixoto authored Apr 11, 2016
  
  936e7260
- vertex_similarity(): Small fixes to docstring · 9e41e054
  Tiago Peixoto authored Apr 11, 2016
  
  9e41e054