- 02 May, 2013 1 commit
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Tiago Peixoto authored
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- 01 May, 2013 1 commit
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Tiago Peixoto authored
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- 25 Apr, 2013 2 commits
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Tiago Peixoto authored
This also improves some of the existing shuffling strategies with a fast alias sampling. The parameter names of the random_graph() and random_rewire() functions have been made more consistent.
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Tiago Peixoto authored
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- 13 Apr, 2013 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 11 Feb, 2013 1 commit
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Tiago Peixoto authored
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- 06 Jan, 2013 1 commit
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Tiago Peixoto authored
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- 26 Dec, 2012 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
The object may be globally reset via the seed_rng() function.
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- 31 Oct, 2012 1 commit
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Tiago Peixoto authored
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- 03 Jun, 2012 1 commit
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Tiago Peixoto authored
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- 08 May, 2012 1 commit
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Tiago Peixoto authored
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- 02 May, 2012 1 commit
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Tiago Peixoto authored
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- 29 Apr, 2012 3 commits
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Tiago Peixoto authored
This makes the code more efficient if the input parameter combinations are much larger than the graph itself.
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 27 Nov, 2011 1 commit
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Tiago Peixoto authored
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- 18 Nov, 2011 1 commit
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Tiago Peixoto authored
This changes stlightly the information passed to the auxiliary functions provided by the user, so that more arbitrary structures can be constructed more easily.
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- 15 Nov, 2011 1 commit
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Tiago Peixoto authored
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- 12 Oct, 2011 1 commit
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Tiago Peixoto authored
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- 02 Sep, 2011 2 commits
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Tiago Peixoto authored
Images are now converted to png a posteriori for html output, but are used as pdf for latex.
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Tiago Peixoto authored
This fixes a bug in the "correlated" mode in random_rewire().
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- 26 Aug, 2011 1 commit
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Tiago Peixoto authored
This implements a general "blockmodel" generation / rewiring algorithm, using Gibbs acceptence / rejection sampling (a.k.a Metropolis-Hastings). This also implements some optimizations in the rewiring code, which makes it more efficient on filtered graphs.
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- 24 Aug, 2011 1 commit
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Tiago Peixoto authored
This introduces several simplifications and corrections to the graph rewire algorithm, to guarantee unbiased sampling. Now a move is outright rejected if it produces a self-loop/parallel-edge, instead of retried. This also adds a "non-sweep" mode, where edges are rewired randomly, possibly with repetition. The edge moves are now simplified to the target of the edges only, since swaping sources is redundant. The number of iterations can now be explicitly modified, so it is not necessary to call the function more than once, and it is emphasized in the documentation that only after sufficiently many iterations can the graph be guaranteed to be fully mixed.
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- 06 May, 2011 1 commit
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Tiago Peixoto authored
Now, if 'm' is larger than the seed graph, it is set to the size of the seed graph, and is increased progressively until it matches the desired value. This removes the need to start with a random seed graph of the appropriate size. This also includes modifications which make the code more robust against parameter choices which don't make much sense, e.g. lead to negative probabilites.
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- 06 Mar, 2011 1 commit
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Tiago Peixoto authored
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- 02 Mar, 2011 1 commit
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Tiago Peixoto authored
This fixes a leftover bug from the removal of the 'core' submodule.
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- 10 Feb, 2011 1 commit
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Tiago Peixoto authored
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- 21 Dec, 2010 1 commit
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Tiago Peixoto authored
Added more DOI links to references, and other cosmetic changes.
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- 13 Nov, 2010 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 04 Oct, 2010 1 commit
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Tiago Peixoto authored
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- 13 Jul, 2010 1 commit
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Tiago Peixoto authored
Now the meaning of the bin edges given to the several histogram functions are the same as in numpy/scipy. This means that the last bin edge represents an upper bound on the last bin.
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- 21 May, 2010 1 commit
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Tiago Peixoto authored
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- 03 May, 2010 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
Vectors are used now instead of unordered_sets, which dramatically improves performace.
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Tiago Peixoto authored
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- 07 Mar, 2010 1 commit
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Tiago Peixoto authored
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