Commits · c08bbf86a3d47475b71bfad7059af9b924e0dd24 · Tiago Peixoto / graph-tool

13 Mar, 2018 1 commit
- inference.blockmodel: Move UncertainBaseState.get_edge_prob() to C++ · c08bbf86
  Tiago Peixoto authored Mar 13, 2018
```
This also implements UncertainBaseState.get_edges_prob().
```
  c08bbf86
12 Mar, 2018 9 commits
- inference.blockmodel: Fix issue with MixedMeasuredBlockState · 60e235e0
  Tiago Peixoto authored Mar 12, 2018
  
  60e235e0
- inference.blockmodel: Implement MixedMeasuredBlockState · e703c29c
  Tiago Peixoto authored Mar 12, 2018
  
  e703c29c
- collection: Update konect URL · 5bbbfc4b
  Tiago Peixoto authored Mar 12, 2018
  
  5bbbfc4b
- inference.uncertain_blockmodel: Fix pickling bug · f32baccc
  Tiago Peixoto authored Mar 12, 2018
  
  f32baccc
- inference.blockmodel: Fix pickling problem with BlockState · 8efb5176
  Tiago Peixoto authored Mar 12, 2018
  
  8efb5176
- inference.MeasuredBlockState: Reflect missing edge probability · 7e43294e
  Tiago Peixoto authored Mar 12, 2018
  
  7e43294e
- Fix docstrings · 40c76afc
  Tiago Peixoto authored Mar 12, 2018
  
  40c76afc
- inference.mcmc.TemperingState: Keep track of state indices · 41dc36a4
  Tiago Peixoto authored Mar 12, 2018
  
  41dc36a4
- inference.uncertain_blockmodel: make edge prior optional · d37c0de0
  Tiago Peixoto authored Mar 12, 2018
  
  d37c0de0
11 Mar, 2018 6 commits
- Fix bug in motifs() · 332ac74d
  Tiago Peixoto authored Mar 11, 2018
```
This fixes issue #431
```
  332ac74d
- Fix doctests · ed348374
  Tiago Peixoto authored Mar 11, 2018
  
  ed348374
- Fix compilation warning · 669e3448
  Tiago Peixoto authored Mar 11, 2018
  
  669e3448
- Fix issue with motif_significance() · 5c370c56
  Tiago Peixoto authored Mar 10, 2018
```
This fixes issue #444.
```
  5c370c56
- Sphinx cleanup and docs update · 00de67ff
  Tiago Peixoto authored Mar 08, 2018
  
  00de67ff
- inference.blockmodel: Improve nested SBM equilibration · 4f0c7fe6
  Tiago Peixoto authored Feb 10, 2018
```
This modifies the MCMC code to allow simultaneous update of
all hierarchy levels, improving equilibration speed.
```
  4f0c7fe6
10 Mar, 2018 1 commit
- Fix docstrings · 749572d8
  Tiago Peixoto authored Feb 14, 2018
  
  749572d8
14 Feb, 2018 5 commits
- inference: Add parameter r to TemperingState · 50b7f803
  Tiago Peixoto authored Feb 14, 2018
  
  50b7f803
- Fix compilation problem with clang · afd7243a
  Tiago Peixoto authored Feb 14, 2018
  
  afd7243a
- inference: Fix problem with coupled states · 35b3bf30
  Tiago Peixoto authored Feb 14, 2018
  
  35b3bf30
- Update copyright date · 8f16e8ff
  Tiago Peixoto authored Feb 11, 2018
  
  8f16e8ff
- inference: Implement code for uncertain networks · d25f8d92
  Tiago Peixoto authored Dec 19, 2017
  
  d25f8d92
11 Feb, 2018 1 commit
- inference: Cleanup propagate delta · 2d5051a9
  Tiago Peixoto authored Feb 11, 2018
  
  2d5051a9
10 Feb, 2018 2 commits
- inference: Slightly improve entry computation performance · f606acc2
  Tiago Peixoto authored Feb 10, 2018
  
  f606acc2
- inference: Fix issues with overlapping SBM and self-loops · e7363032
  Tiago Peixoto authored Jan 25, 2018
  
  e7363032
01 Feb, 2018 15 commits
- inference: Implement 'bfield' parameter · 54fa4532
  Tiago Peixoto authored Jan 15, 2018
  
  54fa4532
- inference: Fix issue with overlapping groups and self-loops · ecb5088e
  Tiago Peixoto authored Jan 20, 2018
  
  ecb5088e
- Fix compilation issue with clang · 19d1b8d8
  Tiago Peixoto authored Jan 20, 2018
  
  19d1b8d8
- Disambiguate between is_directed_ metafunction and is_directed() · f22bdb74
  Tiago Peixoto authored Jan 18, 2018
```
This fixes compilation with older GCC versions (ca. 5.0.0).
```
  f22bdb74
- inference: Cosmetic fix to log_q_approx() · d9ddaf60
  Tiago Peixoto authored Jan 15, 2018
  
  d9ddaf60
- inference: Improve block entry delta computation · 5bf396b3
  Tiago Peixoto authored Jan 13, 2018
  
  5bf396b3
- inference: Implement parallel sweeps for TemperingState with NestedBlockState · f44e89c4
  Tiago Peixoto authored Jan 04, 2018
  
  f44e89c4
- inference: Improve caching of lgamma()/log()/xlogx() · 5369eb34
  Tiago Peixoto authored Jan 04, 2018
  
  5369eb34
- inference: Delete unused block edges · a3c332d0
  Tiago Peixoto authored Jan 04, 2018
  
  a3c332d0
- inference: Reset m_entries and skip no-op virtual move · fe8b6724
  Tiago Peixoto authored Jan 04, 2018
  
  fe8b6724
- inference: Add self-loops and parallel edges to test_inference.py · 536b3c3b
  Tiago Peixoto authored Jan 20, 2018
  
  536b3c3b
- graph_blockmodel_elist.hh: Clear empty buckets · 79190e65
  Tiago Peixoto authored Jan 04, 2018
  
  79190e65
- dynamic_sampler.hh: Fix rebuild() · 385e8f86
  Tiago Peixoto authored Jan 04, 2018
  
  385e8f86
- inference: Implement parallel sweeps for TemperingState · 621322fb
  Tiago Peixoto authored Jan 03, 2018
  
  621322fb
- inference: Fix multiflip mcmc probabilities · 69b74660
  Tiago Peixoto authored Jan 03, 2018
```
This also makes niter correspond to number of sweeps
```
  69b74660