- 02 Sep, 2011 1 commit
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Tiago Peixoto authored
This fixes a bug in the "correlated" mode in random_rewire().
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- 26 Aug, 2011 1 commit
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Tiago Peixoto authored
This implements a general "blockmodel" generation / rewiring algorithm, using Gibbs acceptence / rejection sampling (a.k.a Metropolis-Hastings). This also implements some optimizations in the rewiring code, which makes it more efficient on filtered graphs.
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- 24 Aug, 2011 1 commit
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Tiago Peixoto authored
This introduces several simplifications and corrections to the graph rewire algorithm, to guarantee unbiased sampling. Now a move is outright rejected if it produces a self-loop/parallel-edge, instead of retried. This also adds a "non-sweep" mode, where edges are rewired randomly, possibly with repetition. The edge moves are now simplified to the target of the edges only, since swaping sources is redundant. The number of iterations can now be explicitly modified, so it is not necessary to call the function more than once, and it is emphasized in the documentation that only after sufficiently many iterations can the graph be guaranteed to be fully mixed.
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- 02 Mar, 2011 1 commit
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Tiago Peixoto authored
This fixes a leftover bug from the removal of the 'core' submodule.
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- 10 Feb, 2011 1 commit
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Tiago Peixoto authored
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- 13 Nov, 2010 1 commit
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Tiago Peixoto authored
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- 13 Jul, 2010 1 commit
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Tiago Peixoto authored
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- 03 May, 2010 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 07 Mar, 2010 1 commit
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Tiago Peixoto authored
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- 20 Feb, 2010 1 commit
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Tiago Peixoto authored
This fixes the expected values for several doctests, after random_graph() re-factoring.
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- 05 Oct, 2009 1 commit
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Tiago Peixoto authored
This completes all the documentation up to this point.
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- 07 Sep, 2009 1 commit
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Tiago Peixoto authored
Mostly in the flow and spectral modules.
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- 05 Sep, 2009 1 commit
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Tiago Peixoto authored
This includes generations of releated matrices for spectral analysis, such as the adjacency matrix, laplacian matrix and incidence matrix.
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