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    • Tiago Peixoto's avatar
      Refactor 'community' module and rename to 'inference' · 41471e3c
      Tiago Peixoto authored
      This is a significant refactoring of the statistical inference code,
      with many cleanups and improvements, and is aimed towards future
      extensibility.
      
      The old community module is available as 'community_old' and will be
      completely removed in the near future.
      41471e3c
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  31. 24 Aug, 2011 1 commit
    • Tiago Peixoto's avatar
      Several improvements to random_rewire() / random_graph() · 8240714e
      Tiago Peixoto authored
      This introduces several simplifications and corrections to the graph
      rewire algorithm, to guarantee unbiased sampling.
      
      Now a move is outright rejected if it produces a
      self-loop/parallel-edge, instead of retried. This also adds a
      "non-sweep" mode, where edges are rewired randomly, possibly with
      repetition.
      
      The edge moves are now simplified to the target of the edges only,
      since swaping sources is redundant.
      
      The number of iterations can now be explicitly modified, so it is not
      necessary to call the function more than once, and it is emphasized in
      the documentation that only after sufficiently many iterations can the
      graph be guaranteed to be fully mixed.
      8240714e
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