1. 05 Oct, 2009 2 commits
  2. 03 Oct, 2009 1 commit
  3. 18 Sep, 2009 2 commits
  4. 12 Sep, 2009 1 commit
    • Tiago Peixoto's avatar
      Speed up motifs() and motif_significance() · 06b2914a
      Tiago Peixoto authored
      In both functions we can save some time by hashing the subgraphs found,
      according to their degree distribution signature (instead of number of
      edges). This avoids a large number of useless exactness or isomorphism
      comparisons.
      
      This also removes the "seed" parameter, which is redundant to
      the numpy.random.seed() function.
      06b2914a
  5. 06 Sep, 2009 4 commits
  6. 03 Sep, 2009 4 commits
  7. 01 Sep, 2009 1 commit
  8. 27 Aug, 2009 1 commit
  9. 22 Aug, 2009 1 commit
  10. 21 Aug, 2009 5 commits
  11. 17 Aug, 2009 3 commits
  12. 16 Aug, 2009 5 commits
  13. 13 Aug, 2009 1 commit
    • Tiago Peixoto's avatar
      Reorganize exceptions thrown · f257d426
      Tiago Peixoto authored
      No longer only thrown GraphError upon any error, but instead throw
      specific exceptions which are more meaninful and are mapped to standard
      python exceptions, such as IOError, ValueError and RuntimeError.
      f257d426
  14. 09 Aug, 2009 1 commit
    • Tiago Peixoto's avatar
      Modify absolute_trust() algorithm · 54f5c469
      Tiago Peixoto authored
      Path sampling is done using different bias, and the edge sampling is now
      done correctly. There is now only one parameter 'n_iter' which replaces
      'min/max_iter' and 'epslon'.
      54f5c469
  15. 07 Aug, 2009 1 commit
    • Tiago Peixoto's avatar
      Fix bug in random_rewire() with undirected graphs · c72e48d5
      Tiago Peixoto authored
      When using undirected graphs, the implicit direction of each edge was
      not properly handled, and the correlated case would not work. Now, in
      this case, the direction is always checked, and the edge is inverted if
      necessary.
      c72e48d5
  16. 04 Aug, 2009 3 commits
  17. 03 Aug, 2009 2 commits
  18. 02 Aug, 2009 1 commit
  19. 17 Jul, 2009 1 commit