- 02 May, 2012 1 commit
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Tiago Peixoto authored
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- 29 Apr, 2012 4 commits
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Tiago Peixoto authored
This makes the code more efficient if the input parameter combinations are much larger than the graph itself.
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 18 Nov, 2011 1 commit
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Tiago Peixoto authored
This changes stlightly the information passed to the auxiliary functions provided by the user, so that more arbitrary structures can be constructed more easily.
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- 14 Sep, 2011 1 commit
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Tiago Peixoto authored
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- 02 Sep, 2011 1 commit
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Tiago Peixoto authored
This fixes a bug in the "correlated" mode in random_rewire().
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- 26 Aug, 2011 1 commit
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Tiago Peixoto authored
This implements a general "blockmodel" generation / rewiring algorithm, using Gibbs acceptence / rejection sampling (a.k.a Metropolis-Hastings). This also implements some optimizations in the rewiring code, which makes it more efficient on filtered graphs.
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- 24 Aug, 2011 1 commit
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Tiago Peixoto authored
This introduces several simplifications and corrections to the graph rewire algorithm, to guarantee unbiased sampling. Now a move is outright rejected if it produces a self-loop/parallel-edge, instead of retried. This also adds a "non-sweep" mode, where edges are rewired randomly, possibly with repetition. The edge moves are now simplified to the target of the edges only, since swaping sources is redundant. The number of iterations can now be explicitly modified, so it is not necessary to call the function more than once, and it is emphasized in the documentation that only after sufficiently many iterations can the graph be guaranteed to be fully mixed.
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- 06 May, 2011 1 commit
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Tiago Peixoto authored
Now, if 'm' is larger than the seed graph, it is set to the size of the seed graph, and is increased progressively until it matches the desired value. This removes the need to start with a random seed graph of the appropriate size. This also includes modifications which make the code more robust against parameter choices which don't make much sense, e.g. lead to negative probabilites.
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- 10 Feb, 2011 1 commit
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Tiago Peixoto authored
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- 10 Dec, 2010 1 commit
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Tiago Peixoto authored
This fixes ticket 61: http://projects.skewed.de/graph-tool/ticket/61
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- 04 Dec, 2010 1 commit
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Tiago Peixoto authored
Now, whenever GraphWrap is being used, the property maps are always in "checked" mode.
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- 24 Nov, 2010 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 13 Nov, 2010 4 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 10 Oct, 2010 1 commit
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Tiago Peixoto authored
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- 04 Oct, 2010 1 commit
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Tiago Peixoto authored
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- 25 Jul, 2010 1 commit
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Tiago Peixoto authored
This enables support for older versions of GCC (>=4.2), by falling back to the boost tr1 implementation when the GCC version is less than 4.4.
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- 03 May, 2010 2 commits
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Tiago Peixoto authored
Vectors are used now instead of unordered_sets, which dramatically improves performace.
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Tiago Peixoto authored
This fixes a bug where edges were left unindexed.
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- 07 Mar, 2010 1 commit
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Tiago Peixoto authored
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- 20 Feb, 2010 3 commits
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Tiago Peixoto authored
Now the degree sequence is verified with Erdös-Gallai inequalities, and the edges are connected in a deterministic fashion. The edges then are rewired with the random_rewire() function.
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Tiago Peixoto authored
This includes also some internal refactoring, and bug fixes.
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Tiago Peixoto authored
This extensively modifies the random_rewire() algorithm, so that only either the source or the edge of each edge is rewired (not both, as previously), and no parallel edges are created during the algorithm (if desired). The new version is much faster, and never gets stuck. However, more than one run may be necessary in order to obtain a uniform shuffling.
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- 14 Feb, 2010 1 commit
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Tiago Peixoto authored
This fixes a implicit directionality bug in random_rewire() with undirected graphs.
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- 08 Feb, 2010 1 commit
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Tiago Peixoto authored
This fixes a problem, where the underlying edge directionality would cause correlations to arise when rewiring undirected graphs. Now each edge is correctly considered in both possible orientations, which are chosen randomly.
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- 10 Jan, 2010 1 commit
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Tiago Peixoto authored
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- 23 Dec, 2009 1 commit
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Tiago Peixoto authored
This allows compilation with older versions of boost (>=1.38), which in some sistems are the only option. This commit also removes the linking of the boost_graph shared library, since none of its symbols are actually required.
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- 22 Dec, 2009 1 commit
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Tiago Peixoto authored
This implements a simpler rewire strategy where the edges are randomly placed, without preserving the degrees of the vertices.
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- 14 Dec, 2009 1 commit
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Tiago Peixoto authored
It is necessary to use -frounding-math to avoid run-time errors with certain versions of CGAL.
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- 06 Dec, 2009 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
This also includes the library CGAL as a dependency.
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- 05 Nov, 2009 1 commit
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Tiago Peixoto authored
Fix compilation warnings with boost 1.40, remove unnecessary files, fix autoconf macros and link with "boost_graph". This also raises the minimum boost version to 1.40.
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- 23 Oct, 2009 1 commit
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Tiago Peixoto authored
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- 06 Sep, 2009 1 commit
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Tiago Peixoto authored
The file graph_predecessor.hh was missing.
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