Commits · 49ea6aa082566488d6545f3fa84c5775d077ef15 · Tiago Peixoto / graph-tool · GitLab

22 Mar, 2020 2 commits
- Paritition mode: implement nested partitions · 49ea6aa0
  Tiago Peixoto authored Jan 28, 2020
  
  49ea6aa0
- Initial implementation of partition modes · 918ae899
  Tiago Peixoto authored Jan 23, 2020
  
  918ae899
02 Mar, 2020 27 commits
- Implement bipartite maximum weighted matching · 2d134e6d
  Tiago Peixoto authored Feb 05, 2020
  
  2d134e6d
- Add support for maximum weight matching · cc5d0046
  Tiago Peixoto authored Jan 14, 2020
```
This also adds more consistency with the heuristic version of the code.
```
  cc5d0046
- Implement UncertainBaseState.collect_marginal_multigraph() and marginal_multigraph_entropy() · ad33169d
  Tiago Peixoto authored Jan 23, 2020
  
  ad33169d
- Fix bug in LayeredBlockState.get_edges_prob() · ca3ba6bc
  Tiago Peixoto authored Jan 23, 2020
  
  ca3ba6bc
- Fix bug in PropertyDict.items() · abfc17cf
  Tiago Peixoto authored Jan 23, 2020
  
  abfc17cf
- Improve numpy binding to boost::multi_array · ebe35be5
  Tiago Peixoto authored Jan 23, 2020
  
  ebe35be5
- graph_adjacency.hh: force inlining of edge iterator dereferencing · 6a5b5703
  Tiago Peixoto authored Jan 07, 2020
  
  6a5b5703
- inference: NestedBlockState constructor defaults to sampling=True · 2a175140
  Tiago Peixoto authored Jan 07, 2020
  
  2a175140
- inference: speedup addition of new groups · 8d546347
  Tiago Peixoto authored Jan 07, 2020
  
  8d546347
- Improve test_inference_mcmc.py · 85d8c6c9
  Tiago Peixoto authored Jan 07, 2020
  
  85d8c6c9
- Implement VICenterState · 48b231bd
  Tiago Peixoto authored Jan 07, 2020
  
  48b231bd
- inference: optimize multiflip_mcmc() by disabling uncessary edge list updates · 550ab951
  Tiago Peixoto authored Jan 07, 2020
  
  550ab951
- Switch to C++ syntax for function attributes · bf0e2475
  Tiago Peixoto authored Jan 07, 2020
  
  bf0e2475
- inference: fix split-merge bias in multiflip MCMC · 161d5214
  Tiago Peixoto authored Jan 02, 2020
  
  161d5214
- inference: modify LatentMultigraphBlockState.collect_marginal() to gather multiedges · 1cc4bfb1
  Tiago Peixoto authored Jan 01, 2020
  
  1cc4bfb1
- inference: Add LatentMultigraphBlockState as a wrapper to UncertainBlockState · daf7502b
  Tiago Peixoto authored Jan 01, 2020
  
  daf7502b
- inference: fix clabel enforcement in mcmc/multiflip_mcmc · 4822ba5b
  Tiago Peixoto authored Dec 29, 2019
  
  4822ba5b
- inference: fix mergesplit with clabel in multflip_mcmc_sweep() · 3ca7df5f
  Tiago Peixoto authored Dec 27, 2019
  
  3ca7df5f
- inference: add scatter stage split to multiflip_mcmc · de8556fc
  Tiago Peixoto authored Dec 14, 2019
  
  de8556fc
- inference: preserve pclabel in mcmc · 8918329f
  Tiago Peixoto authored Dec 14, 2019
  
  8918329f
- PropertyMap: fix pickle backwards compatibility · 1d780746
  Tiago Peixoto authored Dec 13, 2019
  
  1d780746
- Fix typo in inference HOWTO · 91954a2d
  Tiago Peixoto authored Dec 11, 2019
  
  91954a2d
- inference: prevent clabel invalidation in multiflip_mcmc_sweep() · 72cb613d
  Tiago Peixoto authored Dec 11, 2019
  
  72cb613d
- inference: add random imbalance to split staging in multiflip_mcmc_sweep() · 6bffcc02
  Tiago Peixoto authored Dec 10, 2019
  
  6bffcc02
- hierarchy_minimize(): Fix NameError when the caller supplies a hierarchy that... · 8062aa44
  Stuart Berg authored Jan 30, 2020 and Tiago Peixoto committed Mar 02, 2020
```
hierarchy_minimize(): Fix NameError when the caller supplies a hierarchy that is missing the top level
```
  8062aa44
- Fix autoconf detection of CGAL 5 · 95c0d9f0
  Tiago Peixoto authored Mar 02, 2020
```
This fixes issue #625
```
  95c0d9f0
- Add missing 'raise' in group_vector_property() · 57793779
  Tiago Peixoto authored Mar 02, 2020
```
This fixes issue #633
```
  57793779
01 Mar, 2020 1 commit
- configure: workaround for boost 1.72 coroutine bug · 9aeba521
  Tiago Peixoto authored Feb 17, 2020
  
  9aeba521
22 Nov, 2019 2 commits
- test_inference_mcmc: change figure size · ed3d3c25
  Tiago Peixoto authored Nov 22, 2019
  
  ed3d3c25
- inference: refactor multiflip MCMC · b694522e
  Tiago Peixoto authored Nov 22, 2019
  
  b694522e
27 Oct, 2019 1 commit
- Fix swap counting in TemperingState · 080938d8
  Tiago Peixoto authored Oct 27, 2019
  
  080938d8
21 Oct, 2019 7 commits
- Add option 'window' and 'return_window' to interactive_window() · cdcddcc4
  Tiago Peixoto authored Oct 20, 2019
```
This makes it easier to do interactive animations, e.g. when using IPython.
```
  cdcddcc4
- Add internal property map information to Graph.__repr__() · 6a62cc4b
  Tiago Peixoto authored Oct 20, 2019
  
  6a62cc4b
- Implement random_shortest_path() and count_shortest_paths() · 5a5a9a57
  Tiago Peixoto authored Oct 20, 2019
  
  5a5a9a57
- blockmodel: add 'recombine' move to multiflip_mcmc() · 12691b83
  Tiago Peixoto authored Oct 13, 2019
  
  12691b83
- blockmodel: add if constexpr · 95dad5c7
  Tiago Peixoto authored Oct 21, 2019
  
  95dad5c7
- blockmodel: Fix issue with OverlapBlockState · 53fe126e
  Tiago Peixoto authored Oct 21, 2019
  
  53fe126e
- TemperingState: count swap attempts and improve swap performance · a7a220ec
  Tiago Peixoto authored Oct 21, 2019
  
  a7a220ec