- 12 Oct, 2011 1 commit
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Tiago Peixoto authored
This includes a spirit parser for the gml syntax, and a graph writer. Additionaly, the general graph io code also been cleaned up.
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- 11 Oct, 2011 1 commit
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Tiago Peixoto authored
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- 25 Sep, 2011 1 commit
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Tiago Peixoto authored
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- 22 Sep, 2011 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
This fixes ticket:73
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- 14 Sep, 2011 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 04 Sep, 2011 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 02 Sep, 2011 4 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
Images are now converted to png a posteriori for html output, but are used as pdf for latex.
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Tiago Peixoto authored
This fixes a compile error with gcc 4.4 and boost in debian squeeze.
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Tiago Peixoto authored
This fixes a bug in the "correlated" mode in random_rewire().
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- 26 Aug, 2011 1 commit
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Tiago Peixoto authored
This implements a general "blockmodel" generation / rewiring algorithm, using Gibbs acceptence / rejection sampling (a.k.a Metropolis-Hastings). This also implements some optimizations in the rewiring code, which makes it more efficient on filtered graphs.
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- 24 Aug, 2011 3 commits
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Tiago Peixoto authored
This introduces several simplifications and corrections to the graph rewire algorithm, to guarantee unbiased sampling. Now a move is outright rejected if it produces a self-loop/parallel-edge, instead of retried. This also adds a "non-sweep" mode, where edges are rewired randomly, possibly with repetition. The edge moves are now simplified to the target of the edges only, since swaping sources is redundant. The number of iterations can now be explicitly modified, so it is not necessary to call the function more than once, and it is emphasized in the documentation that only after sufficiently many iterations can the graph be guaranteed to be fully mixed.
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 15 Aug, 2011 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
Newly added vertices or edges in filtered graphs now automatically appear in them.
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- 14 Aug, 2011 1 commit
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Tiago Peixoto authored
This better organizes the documentation of the Graph class and provides other small fixes.
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- 13 Aug, 2011 5 commits
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Tiago Peixoto authored
This allows pinning of individual vertices via the `pin` paramenter, as well as string-valued color property maps, and some other minor improvements.
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
This implements access to filtered graphs either with boolean-indexed array or masked arrays, through the 'fa' and 'ma' attributes, respectively.
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- 14 Jul, 2011 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 08 Jul, 2011 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 30 Jun, 2011 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
For some reason sphinx looks for a graph_tool module inside graph_tool. This commit defines such a thing.
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- 28 Jun, 2011 3 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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Tiago Peixoto authored
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- 21 Jun, 2011 1 commit
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Tiago Peixoto authored
This fixes a bug where filtered vertices would be incorrectly marked, if the largest component index happend to be zero.
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- 16 Jun, 2011 2 commits
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Tiago Peixoto authored
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Tiago Peixoto authored
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