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graph-tool
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Tiago Peixoto
graph-tool
Commits
cce083bc
Commit
cce083bc
authored
Nov 30, 2020
by
Tiago Peixoto
Browse files
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Merge branch 'includes' into 'master'
Remove unused includes See merge request
!43
parents
4e66070a
e351c829
Pipeline
#756
passed with stage
in 71 minutes and 26 seconds
Changes
42
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1
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42 changed files
with
4 additions
and
98 deletions
+4
-98
src/graph/generation/graph_generation.hh
src/graph/generation/graph_generation.hh
+0
-2
src/graph/generation/graph_knn.hh
src/graph/generation/graph_knn.hh
+0
-1
src/graph/generation/graph_lattice.hh
src/graph/generation/graph_lattice.hh
+0
-1
src/graph/generation/graph_maxent_sbm.hh
src/graph/generation/graph_maxent_sbm.hh
+0
-1
src/graph/generation/graph_rewiring.hh
src/graph/generation/graph_rewiring.hh
+0
-1
src/graph/generation/graph_sbm.hh
src/graph/generation/graph_sbm.hh
+0
-4
src/graph/generation/graph_triangulation.hh
src/graph/generation/graph_triangulation.hh
+0
-2
src/graph/gml.hh
src/graph/gml.hh
+0
-11
src/graph/graph_adaptor.hh
src/graph/graph_adaptor.hh
+0
-3
src/graph/graph_adjacency.hh
src/graph/graph_adjacency.hh
+0
-3
src/graph/graph_filtered.hh
src/graph/graph_filtered.hh
+0
-1
src/graph/graph_properties.hh
src/graph/graph_properties.hh
+0
-3
src/graph/graph_properties_copy_imp1.cc
src/graph/graph_properties_copy_imp1.cc
+0
-3
src/graph/graph_python_interface.hh
src/graph/graph_python_interface.hh
+0
-3
src/graph/graph_python_interface_imp1.cc
src/graph/graph_python_interface_imp1.cc
+0
-1
src/graph/graph_reverse.hh
src/graph/graph_reverse.hh
+0
-3
src/graph/graphml.cpp
src/graph/graphml.cpp
+0
-1
src/graph/histogram.hh
src/graph/histogram.hh
+0
-2
src/graph/inference/blockmodel/graph_blockmodel_multiflip_mcmc.hh
...h/inference/blockmodel/graph_blockmodel_multiflip_mcmc.hh
+0
-1
src/graph/inference/blockmodel/graph_blockmodel_partition.hh
src/graph/inference/blockmodel/graph_blockmodel_partition.hh
+2
-0
src/graph/inference/graph_latent_multigraph.hh
src/graph/inference/graph_latent_multigraph.hh
+0
-3
src/graph/inference/graph_modularity.hh
src/graph/inference/graph_modularity.hh
+0
-5
src/graph/inference/layers/graph_blockmodel_layers_util.hh
src/graph/inference/layers/graph_blockmodel_layers_util.hh
+0
-2
src/graph/inference/loops/bundled_vacate_loop.hh
src/graph/inference/loops/bundled_vacate_loop.hh
+0
-1
src/graph/inference/loops/gibbs_loop.hh
src/graph/inference/loops/gibbs_loop.hh
+0
-3
src/graph/inference/loops/mcmc_loop.hh
src/graph/inference/loops/mcmc_loop.hh
+0
-1
src/graph/inference/support/graph_state.hh
src/graph/inference/support/graph_state.hh
+0
-5
src/graph/inference/support/int_part.hh
src/graph/inference/support/int_part.hh
+0
-2
src/graph/inference/support/util.hh
src/graph/inference/support/util.hh
+0
-3
src/graph/inference/uncertain/graph_blockmodel_sample_edge.hh
...graph/inference/uncertain/graph_blockmodel_sample_edge.hh
+0
-1
src/graph/inference/uncertain/graph_blockmodel_uncertain_marginal.hh
...nference/uncertain/graph_blockmodel_uncertain_marginal.hh
+0
-2
src/graph/layout/graph_arf.hh
src/graph/layout/graph_arf.hh
+0
-3
src/graph/mpl_nested_loop.hh
src/graph/mpl_nested_loop.hh
+0
-5
src/graph/numpy_bind.hh
src/graph/numpy_bind.hh
+0
-2
src/graph/random.cc
src/graph/random.cc
+2
-0
src/graph/random.hh
src/graph/random.hh
+0
-1
src/graph/read_graphviz_new.cpp
src/graph/read_graphviz_new.cpp
+0
-6
src/graph/stats/graph_parallel.cc
src/graph/stats/graph_parallel.cc
+0
-2
src/graph/str_repr.hh
src/graph/str_repr.hh
+0
-1
src/graph/topology/graph_bipartite_weighted_matching.hh
src/graph/topology/graph_bipartite_weighted_matching.hh
+0
-1
src/graph/topology/graph_matching.cc
src/graph/topology/graph_matching.cc
+0
-1
src/graph/topology/graph_transitive_closure.cc
src/graph/topology/graph_transitive_closure.cc
+0
-1
No files found.
src/graph/generation/graph_generation.hh
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cce083bc
...
...
@@ -18,8 +18,6 @@
#ifndef GRAPH_GENERATION_HH
#define GRAPH_GENERATION_HH
#include <tuple>
#include <boost/functional/hash.hpp>
#include <map>
#include <set>
#include <iostream>
...
...
src/graph/generation/graph_knn.hh
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cce083bc
...
...
@@ -19,7 +19,6 @@
#define GRAPH_KNN_HH
#include <tuple>
#include <iostream>
#include <random>
#include <boost/functional/hash.hpp>
...
...
src/graph/generation/graph_lattice.hh
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cce083bc
...
...
@@ -18,7 +18,6 @@
#ifndef GRAPH_LATTICE_HH
#define GRAPH_LATTICE_HH
#include <iostream>
#include "graph_util.hh"
namespace
graph_tool
...
...
src/graph/generation/graph_maxent_sbm.hh
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cce083bc
...
...
@@ -19,7 +19,6 @@
#define GRAPH_MAXENT_SBM_HH
#include <tuple>
#include <iostream>
#include "graph.hh"
#include "graph_filtering.hh"
...
...
src/graph/generation/graph_rewiring.hh
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cce083bc
...
...
@@ -20,7 +20,6 @@
#include <tuple>
#include <iostream>
#include <boost/functional/hash.hpp>
#include "graph.hh"
#include "graph_filtering.hh"
...
...
src/graph/generation/graph_sbm.hh
View file @
cce083bc
...
...
@@ -18,10 +18,6 @@
#ifndef GRAPH_SBM_HH
#define GRAPH_SBM_HH
#include <tuple>
#include <iostream>
#include <boost/functional/hash.hpp>
#include "graph.hh"
#include "graph_filtering.hh"
#include "graph_util.hh"
...
...
src/graph/generation/graph_triangulation.hh
View file @
cce083bc
...
...
@@ -23,8 +23,6 @@
#ifndef GRAPH_TRIANGULATION_HH
#define GRAPH_TRIANGULATION_HH
#include <tuple>
#include "graph_util.hh"
#include "hash_map_wrap.hh"
...
...
src/graph/gml.hh
View file @
cce083bc
...
...
@@ -22,29 +22,18 @@
#include <boost/config/warning_disable.hpp>
#include <boost/spirit/include/qi.hpp>
#include <boost/spirit/include/phoenix_core.hpp>
#include <boost/spirit/include/phoenix_operator.hpp>
#include <boost/spirit/include/phoenix_fusion.hpp>
#include <boost/spirit/include/phoenix_stl.hpp>
#include <boost/fusion/include/adapt_struct.hpp>
#include <boost/variant/recursive_variant.hpp>
#include <boost/variant/get.hpp>
#include <boost/spirit/include/support_istream_iterator.hpp>
#include <boost/foreach.hpp>
#include <boost/regex/pending/unicode_iterator.hpp>
#include <boost/algorithm/string/replace.hpp>
#include <boost/property_map/dynamic_property_map.hpp>
#include <boost/tuple/tuple.hpp>
#include <boost/graph/graph_traits.hpp>
#include <boost/graph/properties.hpp>
#include <boost/python.hpp>
#include <iostream>
#include <fstream>
#include <string>
#include <vector>
#include <unordered_map>
...
...
src/graph/graph_adaptor.hh
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cce083bc
...
...
@@ -18,12 +18,9 @@
#ifndef GRAPH_ADAPTOR_HH
#define GRAPH_ADAPTOR_HH
#include <list>
#include <boost/config.hpp>
#include <boost/iterator_adaptors.hpp>
#include <boost/graph/graph_traits.hpp>
#include <boost/graph/properties.hpp>
#include "transform_iterator.hh"
...
...
src/graph/graph_adjacency.hh
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cce083bc
...
...
@@ -21,14 +21,11 @@
#include <vector>
#include <deque>
#include <utility>
#include <numeric>
#include <tuple>
#include <boost/iterator.hpp>
#include <boost/graph/graph_traits.hpp>
#include <boost/range/irange.hpp>
#include <boost/property_map/property_map.hpp>
#include <boost/graph/properties.hpp>
#include <boost/iterator/transform_iterator.hpp>
#include <boost/iterator/iterator_facade.hpp>
#ifdef __clang__
...
...
src/graph/graph_filtered.hh
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cce083bc
...
...
@@ -30,7 +30,6 @@
#include <boost/graph/graph_traits.hpp>
#include <boost/graph/properties.hpp>
#include <boost/graph/adjacency_iterator.hpp>
#include <boost/graph/detail/set_adaptor.hpp>
#include <boost/iterator/filter_iterator.hpp>
#include <boost/graph/filtered_graph.hpp> // for predicate classes
...
...
src/graph/graph_properties.hh
View file @
cce083bc
...
...
@@ -18,11 +18,8 @@
#ifndef GRAPH_PROPERTIES_HH
#define GRAPH_PROPERTIES_HH
#include <typeinfo>
#include <string>
#include <vector>
#include <memory>
#include <random>
#include <unordered_map>
#include <boost/functional/hash.hpp>
#include <boost/python/object.hpp>
...
...
src/graph/graph_properties_copy_imp1.cc
View file @
cce083bc
...
...
@@ -19,9 +19,6 @@
#include "graph_filtering.hh"
#include "graph_properties.hh"
#include <boost/mpl/contains.hpp>
#include <boost/python/extract.hpp>
#include "graph_properties_copy.hh"
using
namespace
std
;
...
...
src/graph/graph_python_interface.hh
View file @
cce083bc
...
...
@@ -33,8 +33,6 @@ namespace std
}
#include <boost/graph/graph_traits.hpp>
#include <boost/mpl/logical.hpp>
#include <boost/iterator/iterator_facade.hpp>
#include <boost/version.hpp>
#if (BOOST_VERSION >= 104000)
...
...
@@ -42,7 +40,6 @@ namespace std
#else
# include <boost/dynamic_property_map.hpp>
#endif
#include <type_traits>
#include "graph.hh"
#include "graph_filtering.hh"
...
...
src/graph/graph_python_interface_imp1.cc
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cce083bc
...
...
@@ -23,7 +23,6 @@
#include <boost/python.hpp>
#include <boost/python/stl_iterator.hpp>
#include <set>
using
namespace
std
;
...
...
src/graph/graph_reverse.hh
View file @
cce083bc
...
...
@@ -24,9 +24,6 @@
# define GRAPH_REVERSE
#include <boost/graph/adjacency_iterator.hpp>
#include <boost/graph/properties.hpp>
#include <boost/iterator/transform_iterator.hpp>
#include <boost/mpl/if.hpp>
#include <utility>
#if BOOST_WORKAROUND(BOOST_MSVC, < 1300)
...
...
src/graph/graphml.cpp
View file @
cce083bc
...
...
@@ -9,7 +9,6 @@
// Andrew Lumsdaine
// Tiago de Paula Peixoto
#include <boost/python.hpp>
#include <expat.h>
#include <boost/graph/graphml.hpp>
#include <boost/algorithm/string/replace.hpp>
...
...
src/graph/histogram.hh
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cce083bc
...
...
@@ -28,8 +28,6 @@
#include <boost/mpl/if.hpp>
#include <boost/mpl/int.hpp>
#include <boost/python/object.hpp>
//
// This is a generic multidimensional histogram type
//
...
...
src/graph/inference/blockmodel/graph_blockmodel_multiflip_mcmc.hh
View file @
cce083bc
...
...
@@ -22,7 +22,6 @@
#include <vector>
#include <algorithm>
#include <queue>
#include "graph_tool.hh"
#include "../support/graph_state.hh"
...
...
src/graph/inference/blockmodel/graph_blockmodel_partition.hh
View file @
cce083bc
...
...
@@ -23,6 +23,8 @@
#include "hash_map_wrap.hh"
#include <boost/range/counting_range.hpp>
namespace
graph_tool
{
...
...
src/graph/inference/graph_latent_multigraph.hh
View file @
cce083bc
...
...
@@ -18,10 +18,7 @@
#ifndef GRAPH_LATENT_MULTIGRAPH_HH
#define GRAPH_LATENT_MULTIGRAPH_HH
#include <tuple>
#include <iostream>
#include <fstream>
#include <iomanip>
#include "graph_tool.hh"
#include "hash_map_wrap.hh"
...
...
src/graph/inference/graph_modularity.hh
View file @
cce083bc
...
...
@@ -18,11 +18,6 @@
#ifndef GRAPH_MODULARITY_HH
#define GRAPH_MODULARITY_HH
#include <tuple>
#include <iostream>
#include <fstream>
#include <iomanip>
#include "graph_tool.hh"
#include "hash_map_wrap.hh"
...
...
src/graph/inference/layers/graph_blockmodel_layers_util.hh
View file @
cce083bc
...
...
@@ -20,8 +20,6 @@
#include "config.h"
#include <vector>
namespace
graph_tool
{
using
namespace
boost
;
...
...
src/graph/inference/loops/bundled_vacate_loop.hh
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cce083bc
...
...
@@ -20,7 +20,6 @@
#include "config.h"
#include <iostream>
#include <queue>
#include <tuple>
...
...
src/graph/inference/loops/gibbs_loop.hh
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cce083bc
...
...
@@ -20,9 +20,6 @@
#include "config.h"
#include <iostream>
#include <queue>
#include <tuple>
#include "hash_map_wrap.hh"
...
...
src/graph/inference/loops/mcmc_loop.hh
View file @
cce083bc
...
...
@@ -21,7 +21,6 @@
#include "config.h"
#include <iostream>
#include <queue>
#include <tuple>
...
...
src/graph/inference/support/graph_state.hh
View file @
cce083bc
...
...
@@ -22,18 +22,13 @@
#include <boost/preprocessor/comparison/equal.hpp>
#include <boost/preprocessor/cat.hpp>
#include <boost/preprocessor/seq/size.hpp>
#include <boost/preprocessor/seq/for_each.hpp>
#include <boost/preprocessor/seq/for_each_i.hpp>
#include <boost/preprocessor/stringize.hpp>
#include <boost/preprocessor/tuple/elem.hpp>
#include <boost/preprocessor/control/if.hpp>
#include <boost/preprocessor/arithmetic/dec.hpp>
#include <boost/preprocessor/seq/transform.hpp>
#include <boost/preprocessor/seq/filter.hpp>
#include <boost/preprocessor/comparison/equal.hpp>
#include <boost/preprocessor/comparison/not_equal.hpp>
#include <boost/preprocessor/punctuation/comma.hpp>
#include <boost/preprocessor/facilities/empty.hpp>
#include <boost/preprocessor/seq/first_n.hpp>
#include "graph.hh"
...
...
src/graph/inference/support/int_part.hh
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cce083bc
...
...
@@ -10,8 +10,6 @@
#include "config.h"
#include <cmath>
#include <iostream>
#include <boost/multi_array.hpp>
#include "cache.hh"
...
...
src/graph/inference/support/util.hh
View file @
cce083bc
...
...
@@ -21,12 +21,9 @@
#include "config.h"
#include <cmath>
#include <iostream>
#include "cache.hh"
#include <boost/range/counting_range.hpp>
namespace
graph_tool
{
using
namespace
boost
;
...
...
src/graph/inference/uncertain/graph_blockmodel_sample_edge.hh
View file @
cce083bc
...
...
@@ -19,7 +19,6 @@
#define GRAPH_SBM_SAMPLE_EDGE_HH
#include <tuple>
#include <iostream>
#include "graph.hh"
#include "graph_filtering.hh"
...
...
src/graph/inference/uncertain/graph_blockmodel_uncertain_marginal.hh
View file @
cce083bc
...
...
@@ -20,8 +20,6 @@
#include "config.h"
#include <vector>
#include "../support/graph_state.hh"
#include "../blockmodel/graph_blockmodel_util.hh"
#include "graph_blockmodel_sample_edge.hh"
...
...
src/graph/layout/graph_arf.hh
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cce083bc
...
...
@@ -18,9 +18,6 @@
#ifndef GRAPH_ARF_HH
#define GRAPH_ARF_HH
#include <limits>
#include <iostream>
namespace
graph_tool
{
using
namespace
std
;
...
...
src/graph/mpl_nested_loop.hh
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cce083bc
...
...
@@ -18,11 +18,6 @@
#ifndef NESTED_FOR_LOOP_HH
#define NESTED_FOR_LOOP_HH
#include <boost/mpl/for_each.hpp>
#include <boost/mpl/vector.hpp>
#include <boost/mpl/empty.hpp>
#include <boost/any.hpp>
namespace
boost
{
namespace
mpl
...
...
src/graph/numpy_bind.hh
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cce083bc
...
...
@@ -34,10 +34,8 @@
#include <boost/multi_array.hpp>
#include <boost/mpl/int.hpp>
#include <boost/mpl/vector.hpp>
#include <boost/mpl/map.hpp>
#include <boost/mpl/pair.hpp>
#include <boost/mpl/for_each.hpp>
#include "demangle.hh"
...
...
src/graph/random.cc
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cce083bc
...
...
@@ -19,6 +19,8 @@
#include "random.hh"
#include "parallel_rng.hh"
#include <random>
rng_t
get_rng
(
size_t
seed
)
{
parallel_rng
<
rng_t
>::
clear
();
...
...
src/graph/random.hh
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cce083bc
...
...
@@ -18,7 +18,6 @@
#ifndef RANDOM_HH
#define RANDOM_HH
#include <random>
#include "pcg_random.hpp"
//typedef std::mt19937_64 rng_t;
...
...
src/graph/read_graphviz_new.cpp
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cce083bc
...
...
@@ -31,18 +31,12 @@
#else
# include <boost/dynamic_property_map.hpp>
#endif
#include <boost/graph/graph_traits.hpp>
#include <boost/detail/workaround.hpp>
#include <boost/algorithm/string/case_conv.hpp>
#include <algorithm>
#include <exception> // for std::exception
#include <string>
#include <vector>
#include <set>
#include <utility>
#include <map>
#include <iostream>
#include <cstdlib>
#include <boost/throw_exception.hpp>
#include <boost/regex.hpp>
#include <boost/graph/graphviz.hpp>
...
...
src/graph/stats/graph_parallel.cc
View file @
cce083bc
...
...
@@ -23,8 +23,6 @@
#include <boost/python.hpp>
#include <iostream>
using
namespace
std
;
using
namespace
boost
;
using
namespace
graph_tool
;
...
...
src/graph/str_repr.hh
View file @
cce083bc
...
...
@@ -18,7 +18,6 @@
#ifndef STR_REPR_HH
#define STR_REPR_HH
#include <iostream>
#include <clocale>
#include <sstream>
#include <boost/lexical_cast.hpp>
...
...
src/graph/topology/graph_bipartite_weighted_matching.hh
View file @
cce083bc
...
...
@@ -20,7 +20,6 @@
#include <stack>
#include <boost/graph/breadth_first_search.hpp>
#include <boost/graph/max_cardinality_matching.hpp>
#include "idx_map.hh"
namespace
graph_tool
...
...
src/graph/topology/graph_matching.cc
View file @
cce083bc
...
...
@@ -19,7 +19,6 @@
#include "graph.hh"
#include "graph_properties.hh"
#include <boost/graph/max_cardinality_matching.hpp>
#include <boost/graph/maximum_weighted_matching.hpp>
#include "graph_bipartite_weighted_matching.hh"
...
...
src/graph/topology/graph_transitive_closure.cc
View file @
cce083bc
...
...
@@ -15,7 +15,6 @@
// You should have received a copy of the GNU Lesser General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
#include <boost/python.hpp>
#include <boost/graph/transitive_closure.hpp>
#include "graph.hh"
...
...
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