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Commit c9fca17b authored by Tiago Peixoto's avatar Tiago Peixoto
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Replace edge_difference() by the more general edge_endpoint_property()

parent 201879ac
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src/graph/Makefile.am
View file @ c9fca17b
......@@ -26,6 +26,7 @@ libgraph_tool_core_la_SOURCES = \
graph_io.cc \
graph_openmp.cc \
graph_properties.cc \
graph_properties_imp1.cc \
graph_properties_copy.cc \
graph_properties_group.cc \
graph_properties_ungroup.cc \
......
src/graph/graph_bind.cc
View file @ c9fca17b
......@@ -387,8 +387,8 @@ void group_vector_property(GraphInterface& g, boost::any vector_prop,
boost::any prop, size_t pos, bool edge);
void infect_vertex_property(GraphInterface& gi, boost::any prop,
boost::python::object val);
void edge_difference(GraphInterface& gi, boost::any prop,
boost::any eprop);
void edge_endpoint(GraphInterface& gi, boost::any prop,
boost::any eprop, std::string endpoint);
void mark_edges(GraphInterface& gi, boost::any prop);
void perfect_ehash(GraphInterface& gi, boost::any prop, boost::any hprop,
......@@ -510,7 +510,7 @@ BOOST_PYTHON_MODULE(libgraph_tool_core)
def("group_vector_property", &group_vector_property);
def("ungroup_vector_property", &ungroup_vector_property);
def("infect_vertex_property", &infect_vertex_property);
def("edge_difference", &edge_difference);
def("edge_endpoint", &edge_endpoint);
def("mark_edges", &mark_edges);
def("perfect_ehash", &perfect_ehash);
def("perfect_vhash", &perfect_vhash);
......
src/graph/graph_properties.cc
View file @ c9fca17b
......@@ -217,46 +217,6 @@ vector<Value> operator-(const vector<Value>& a, const vector<Value>& b)
return c;
}
struct do_edge_difference
{
template <class Graph, class EdgeIndexMap, class VertexPropertyMap>
void operator()(Graph& g, EdgeIndexMap, VertexPropertyMap prop,
boost::any eprop) const
{
typedef typename property_traits<VertexPropertyMap>::value_type vval_t;
typedef typename boost::mpl::if_<std::is_same<vval_t, size_t>, int32_t, vval_t>::type
val_t;
typedef typename property_map_type::apply<val_t, EdgeIndexMap>::type
eprop_t;
eprop_t ediff = any_cast<eprop_t>(eprop);
ediff.reserve(num_edges(g));
int i, N = num_vertices(g);
#pragma omp parallel for default(shared) private(i)
for (i = 0; i < N; ++i)
{
typename graph_traits<Graph>::vertex_descriptor v = vertex(i, g);
if (v == graph_traits<Graph>::null_vertex())
continue;
typename graph_traits<Graph>::out_edge_iterator e, e_end;
for (tie(e, e_end) = out_edges(v, g); e != e_end; ++e)
ediff[*e] = prop[target(*e, g)] - prop[source(*e, g)];
}
}
};
void edge_difference(GraphInterface& gi, boost::any prop,
boost::any eprop)
{
typedef boost::mpl::insert_range<vertex_scalar_properties,
boost::mpl::end<vertex_scalar_properties>::type,
vertex_scalar_vector_properties>::type vprops_t;
run_action<>()(gi, bind<void>(do_edge_difference(), _1,
gi.GetEdgeIndex(), _2, eprop),
vprops_t())(prop);
}
struct do_mark_edges
{
template <class Graph, class EdgePropertyMap>
......
src/graph/graph_properties_imp1.cc 0 → 100644
View file @ c9fca17b
// graph-tool -- a general graph modification and manipulation thingy
//
// Copyright (C) 2006-2015 Tiago de Paula Peixoto <tiago@skewed.de>
//
// This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 3
// of the License, or (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
#include "graph_python_interface.hh"
#include "graph.hh"
#include "graph_properties.hh"
#include "graph_filtering.hh"
#include "graph_selectors.hh"
#include "graph_util.hh"
using namespace std;
using namespace boost;
using namespace graph_tool;
template <bool src>
struct do_edge_endpoint
{
template <class Graph, class EdgeIndexMap, class VertexPropertyMap>
void operator()(Graph& g, EdgeIndexMap, VertexPropertyMap prop,
boost::any aeprop) const
{
typedef typename property_traits<VertexPropertyMap>::value_type vval_t;
typedef typename boost::mpl::if_<std::is_same<vval_t, size_t>, int64_t, vval_t>::type
val_t;
typedef typename property_map_type::apply<val_t, EdgeIndexMap>::type
eprop_t;
eprop_t eprop = any_cast<eprop_t>(aeprop);
eprop.reserve(num_edges(g));
int i, N = num_vertices(g);
#pragma omp parallel for default(shared) private(i)
for (i = 0; i < N; ++i)
{
typename graph_traits<Graph>::vertex_descriptor v = vertex(i, g);
if (v == graph_traits<Graph>::null_vertex())
continue;
typename graph_traits<Graph>::out_edge_iterator e, e_end;
for (auto e : out_edges_range(v, g))
{
auto s = v;
auto t = target(e, g);
if (!is_directed::apply<Graph>::type::value && s > t)
continue;
if (src)
eprop[e] = prop[s];
else
eprop[e] = prop[t];
}
}
}
};
void edge_endpoint(GraphInterface& gi, boost::any prop,
boost::any eprop, std::string endpoint)
{
if (endpoint == "source")
run_action<>()(gi, bind<void>(do_edge_endpoint<true>(), _1,
gi.GetEdgeIndex(), _2, eprop),
vertex_properties())(prop);
else
run_action<>()(gi, bind<void>(do_edge_endpoint<false>(), _1,
gi.GetEdgeIndex(), _2, eprop),
vertex_properties())(prop);
}
src/graph_tool/__init__.py
View file @ c9fca17b
......@@ -38,7 +38,7 @@ Summary
group_vector_property
ungroup_vector_property
infect_vertex_property
edge_difference
edge_endpoint_property
perfect_prop_hash
value_types
show_config
......@@ -119,10 +119,11 @@ from .decorators import _wraps, _require, _attrs, _limit_args
from inspect import ismethod
__all__ = ["Graph", "GraphView", "Vertex", "Edge", "Vector_bool",
"Vector_int16_t", "Vector_int32_t", "Vector_int64_t", "Vector_double",
"Vector_long_double", "Vector_string", "value_types", "load_graph",
"PropertyMap", "group_vector_property", "ungroup_vector_property",
"infect_vertex_property", "edge_difference", "perfect_prop_hash",
"Vector_int16_t", "Vector_int32_t", "Vector_int64_t",
"Vector_double", "Vector_long_double", "Vector_string",
"Vector_size_t", "value_types", "load_graph", "PropertyMap",
"group_vector_property", "ungroup_vector_property",
"infect_vertex_property", "edge_endpoint_property", "perfect_prop_hash",
"seed_rng", "show_config", "PropertyArray", "openmp_enabled",
"openmp_get_num_threads", "openmp_set_num_threads", "openmp_get_schedule",
"openmp_set_schedule", "__author__", "__copyright__", "__URL__",
......@@ -983,59 +984,57 @@ def infect_vertex_property(g, prop, vals=None):
vals)
def edge_difference(g, prop, ediff=None):
"""Return an edge property map corresponding to the difference between the
values of `prop` of target and source vertices of each edge.
@_limit_args({"endpoint": ["source", "target"]})
def edge_endpoint_property(g, prop, endpoint, eprop=None):
"""Return an edge property map corresponding to the vertex property `prop` of
either the target and source of the edge, according to `endpoint`.
Parameters
----------
prop : :class:`~graph_tool.PropertyMap`
Vertex property map to be used to compute the difference..
ediff : :class:`~graph_tool.PropertyMap` (optional, default: `None`)
If provided, the difference values will be stored in this property map.
Vertex property map to be used to propagated to the edge.
endpoint : `"source"` or `"target"`
Edge endpoint considered. If the graph is undirected, the source is
always the vertex with the lowest index.
eprop : :class:`~graph_tool.PropertyMap` (optional, default: `None`)
If provided, the resulting edge properties will be stored here.
Returns
-------
ediff : :class:`~graph_tool.PropertyMap`
Edge differences.
eprop : :class:`~graph_tool.PropertyMap`
Propagated edge property.
Examples
--------
>>> gt.seed_rng(42)
>>> g = gt.random_graph(100, lambda: (3, 3))
>>> ediff = gt.edge_difference(g, g.vertex_index)
>>> print(ediff.a)
[ 47 66 10 -1 -65 -56 -91 -62 -38 -1 -86 3 -46 -62 -23 -17 -75 -74
23 -22 9 2 -35 8 -24 -16 -59 -60 32 -13 -43 30 26 -33 32 -8
17 -29 -3 -38 -45 41 50 11 -37 58 13 -23 20 48 -17 64 38 22
63 32 17 7 -10 34 71 20 43 -3 22 13 70 15 63 16 64 86
37 43 32 -4 -34 -19 36 67 63 65 74 39 17 43 10 29 28 37
67 93 61 81 27 -2 20 68 50 45 30 71 -1 39 48 -11 25 50
-25 32 -2 22 -3 40 -29 -7 7 33 8 29 -40 47 -31 -6 -48 -1
-13 4 -27 -57 9 2 22 -35 23 -2 21 25 -67 -39 -14 -82 -42 -7
-74 -27 -43 -10 -22 -36 28 21 1 -15 -71 -63 -72 -14 -40 -78 -43 -23
-83 -12 -43 -26 -48 -52 -58 -82 -14 -44 -62 1 -31 -51 -84 -42 -37 -59
4 -21 -63 -60 -22 -77 -64 -11 4 18 -56 19 4 -12 3 23 -29 -14
-15 -38 -20 -34 -62 -49 -47 29 32 -1 -53 -21 19 13 15 -21 12 -30
-4 -33 66 39 -17 2 50 16 28 -59 -50 -58 69 53 68 -3 60 35
68 -13 -6 48 71 58 14 58 -4 51 52 13 32 -8 -2 63 56 19
47 -1 53 39 45 -18 -13 56 52 -16 44 49 -16 35 -11 49 14 -17
33 11 -8 -31 38 -46 48 -34 47 33 -45 -29 16 3 -48 -44 -58 -9
-12 -57 -21 -47 34 10 -23 -44 -37 -44 1 11]
>>> esource = gt.edge_endpoint_property(g, g.vertex_index, "source")
>>> print(esource.a)
[ 0 0 0 96 96 96 92 92 92 88 88 88 84 84 84 80 80 80 76 76 76 72 72 72 68
68 68 64 64 64 60 60 60 56 56 56 52 52 52 48 48 48 44 44 44 40 40 40 36 36
36 32 32 32 28 28 28 24 24 24 20 20 20 16 16 16 12 12 12 8 8 8 4 4 4
99 99 99 1 1 1 2 2 2 3 3 3 5 5 5 6 6 6 7 7 7 9 9 9 10
10 10 14 14 14 19 19 19 25 25 25 30 30 30 35 35 35 41 41 41 46 46 46 51 51
51 57 57 57 62 62 62 67 67 67 73 73 73 78 78 78 83 83 83 89 89 89 94 94 94
11 11 11 98 98 98 97 97 97 95 95 95 93 93 93 91 91 91 90 90 90 87 87 87 86
86 86 85 85 85 82 82 82 81 81 81 79 79 79 77 77 77 75 75 75 74 74 74 71 71
71 69 69 69 61 61 61 54 54 54 47 47 47 39 39 39 33 33 33 26 26 26 18 18 18
70 70 70 13 13 13 15 15 15 17 17 17 21 21 21 22 22 22 23 23 23 27 27 27 29
29 29 31 31 31 34 34 34 37 37 37 38 38 38 42 42 42 43 43 43 45 45 45 49 49
49 50 50 50 53 53 53 55 55 55 58 58 58 59 59 59 63 63 63 65 65 65 66 66 66]
"""
val_t = prop.value_type()
if val_t == "unsigned long":
val_t = "int32_t"
if ediff is None:
ediff = g.new_edge_property(val_t)
if ediff.value_type() != val_t:
raise ValueError("'ediff' must be of the same value type as 'prop': " +
val_t = "int64_t"
if eprop is None:
eprop = g.new_edge_property(val_t)
if eprop.value_type() != val_t:
raise ValueError("'eprop' must be of the same value type as 'prop': " +
val_t)
if not g.is_directed():
g = GraphView(g, directed=True, skip_properties=True)
libcore.edge_difference(g._Graph__graph, _prop("v", g, prop),
_prop("e", g, ediff))
return ediff
libcore.edge_endpoint(g._Graph__graph, _prop("v", g, prop),
_prop("e", g, eprop), endpoint)
return eprop
@_limit_args({"htype": ["int8_t", "int32_t", "int64_t"]})
def perfect_prop_hash(props, htype="int32_t"):
......
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