Get rid of inconsistent CamelCase in GraphInterface methods

src/graph/centrality/graph_betweenness.cc

@@ -140,10 +140,10 @@ void betweenness(GraphInterface& g, boost::any weight,
     {
         run_action<>()
             (g, std::bind<>(get_weighted_betweenness(),
-                            std::placeholders::_1, g.GetVertexIndex(),
+                            std::placeholders::_1, g.get_vertex_index(),
                             std::placeholders::_2,
                             std::placeholders::_3, weight, normalize,
-                            g.GetNumberOfVertices(), g.GetMaxEdgeIndex()),
+                            g.get_num_vertices(), g.get_max_edge_index()),
              edge_floating_properties(),
              vertex_floating_properties())
             (edge_betweenness, vertex_betweenness);
@@ -152,9 +152,9 @@ void betweenness(GraphInterface& g, boost::any weight,
     {
         run_action<>()
             (g, std::bind<void>(get_betweenness(), std::placeholders::_1,
-                                g.GetVertexIndex(), std::placeholders::_2,
+                                g.get_vertex_index(), std::placeholders::_2,
                                 std::placeholders::_3, normalize,
-                                g.GetNumberOfVertices()),
+                                g.get_num_vertices()),
              edge_floating_properties(),
              vertex_floating_properties())
             (edge_betweenness, vertex_betweenness);

src/graph/centrality/graph_closeness.cc

@@ -35,7 +35,7 @@ void do_get_closeness(GraphInterface& gi, boost::any weight,
     {
         run_action<>()(gi,
                        std::bind(get_closeness(), placeholders::_1,
-                                 gi.GetVertexIndex(), no_weightS(),
+                                 gi.get_vertex_index(), no_weightS(),
                                  placeholders::_2, harmonic, norm),
                        writable_vertex_scalar_properties())(closeness);
     }
@@ -43,7 +43,7 @@ void do_get_closeness(GraphInterface& gi, boost::any weight,
     {
         run_action<>()(gi,
                        std::bind(get_closeness(), placeholders::_1,
-                                 gi.GetVertexIndex(), placeholders::_2,
+                                 gi.get_vertex_index(), placeholders::_2,
                                  placeholders::_3, harmonic, norm),
                        edge_scalar_properties(),
                        writable_vertex_scalar_properties())(weight, closeness);

src/graph/centrality/graph_eigentrust.cc

@@ -38,7 +38,7 @@ size_t eigentrust(GraphInterface& g, boost::any c, boost::any t,
     size_t iter = 0;
     run_action<>()
         (g, bind(get_eigentrust(),
-                 _1, g.GetVertexIndex(), g.GetEdgeIndex(), _2,
+                 _1, g.get_vertex_index(), g.get_edge_index(), _2,
                  _3, epslon, max_iter, ref(iter)),
          writable_edge_scalar_properties(),
          vertex_floating_properties())(c,t);

src/graph/centrality/graph_eigenvector.cc

@@ -42,7 +42,7 @@ long double eigenvector(GraphInterface& g, boost::any w, boost::any c,
 
     long double eig = 0;
     run_action<>()
-        (g, std::bind(get_eigenvector(), placeholders::_1, g.GetVertexIndex(),
+        (g, std::bind(get_eigenvector(), placeholders::_1, g.get_vertex_index(),
                       placeholders::_2, placeholders::_3, epsilon, max_iter,
                       std::ref(eig)),
          weight_props_t(),

src/graph/centrality/graph_hits.cc

@@ -68,7 +68,7 @@ long double hits(GraphInterface& g, boost::any w, boost::any x, boost::any y,
 
     long double eig = 0;
     run_action<>()
-        (g, std::bind(get_hits_dispatch(), placeholders::_1, g.GetVertexIndex(),
+        (g, std::bind(get_hits_dispatch(), placeholders::_1, g.get_vertex_index(),
                       placeholders::_2,  placeholders::_3, y, epsilon, max_iter,
                       std::ref(eig)),
          weight_props_t(),

src/graph/centrality/graph_katz.cc

@@ -53,7 +53,7 @@ void katz(GraphInterface& g, boost::any w, boost::any c, boost::any beta,
     if(beta.empty())
         beta = beta_map_t(1.);
 
-    run_action<>()(g, std::bind(get_katz(), placeholders::_1, g.GetVertexIndex(),
+    run_action<>()(g, std::bind(get_katz(), placeholders::_1, g.get_vertex_index(),
                                 placeholders::_2, placeholders::_3,
                                 placeholders::_4, alpha, epsilon, max_iter),
                    weight_props_t(),

src/graph/centrality/graph_pagerank.cc

@@ -42,7 +42,7 @@ size_t pagerank(GraphInterface& g, boost::any rank, boost::any pers,
         pers_props_t;
 
     if(pers.empty())
-        pers = pers_map_t(1.0 / g.GetNumberOfVertices());
+        pers = pers_map_t(1.0 / g.get_num_vertices());
 
     typedef ConstantPropertyMap<double, GraphInterface::edge_t> weight_map_t;
     typedef boost::mpl::push_back<edge_scalar_properties, weight_map_t>::type
@@ -57,7 +57,7 @@ size_t pagerank(GraphInterface& g, boost::any rank, boost::any pers,
     size_t iter;
     run_action<>()
         (g, std::bind(get_pagerank(),
-                      placeholders::_1, g.GetVertexIndex(), placeholders::_2,
+                      placeholders::_1, g.get_vertex_index(), placeholders::_2,
                       placeholders::_3, placeholders::_4, d,
                       epsilon, max_iter, std::ref(iter)),
          vertex_floating_properties(),

src/graph/centrality/graph_trust_transitivity.cc

@@ -37,7 +37,7 @@ void trust_transitivity(GraphInterface& g, int64_t source, int64_t target,
         throw ValueException("vertex property must be of floating point valued vector type");
 
     run_action<>()(g,
-                   bind<void>(get_trust_transitivity(), _1, g.GetVertexIndex(),
+                   bind<void>(get_trust_transitivity(), _1, g.get_vertex_index(),
                               source, target, _2, _3),
                    edge_floating_properties(),
                    vertex_floating_vector_properties())(c,t);

src/graph/clustering/graph_clustering.cc

@@ -34,25 +34,25 @@ using namespace graph_tool;
 boost::python::tuple global_clustering(GraphInterface& g)
 {
     double c, c_err;
-    bool directed = g.GetDirected();
-    g.SetDirected(false);
+    bool directed = g.get_directed();
+    g.set_directed(false);
     run_action<graph_tool::detail::never_directed>()
         (g, std::bind(get_global_clustering(), std::placeholders::_1,
                       std::ref(c), std::ref(c_err)))();
-    g.SetDirected(directed);
+    g.set_directed(directed);
     return boost::python::make_tuple(c, c_err);
 }
 
 void local_clustering(GraphInterface& g, boost::any prop)
 {
-    bool directed = g.GetDirected();
-    g.SetDirected(false);
+    bool directed = g.get_directed();
+    g.set_directed(false);
     run_action<graph_tool::detail::never_directed>()
         (g, std::bind(set_clustering_to_property(),
                       std::placeholders::_1,
                       std::placeholders::_2),
          writable_vertex_scalar_properties())(prop);
-    g.SetDirected(directed);
+    g.set_directed(directed);
 }
 
 using namespace boost::python;

src/graph/clustering/graph_extended_clustering.cc

@@ -82,7 +82,7 @@ void extended_clustering(GraphInterface& g, boost::python::list props)
 
     boost::any vprop =
         prop_vector<writable_vertex_scalar_properties>()
-        (cmaps, num_vertices(g.GetGraph()));
+        (cmaps, num_vertices(g.get_graph()));
     if (vprop.empty())
         throw ValueException("all vertex properties must be of the same"
                              " floating point type");
@@ -93,7 +93,7 @@ void extended_clustering(GraphInterface& g, boost::python::list props)
 
     run_action<>()
         (g, std::bind<void>(get_extended_clustering(), placeholders::_1,
-                            any_cast<GraphInterface::vertex_index_map_t>(g.GetVertexIndex()),
+                            any_cast<GraphInterface::vertex_index_map_t>(g.get_vertex_index()),
                             placeholders::_2),
          properties_vector()) (vprop);
 }

src/graph/clustering/graph_motifs.cc

@@ -70,7 +70,7 @@ void get_motifs(GraphInterface& g, size_t k, boost::python::list subgraph_list,
                 bool fill_list, rng_t& rng)
 {
     boost::any list;
-    if (g.GetDirected())
+    if (g.get_directed())
         list = vector<d_graph_t>();
     else
         list = vector<u_graph_t>();
@@ -139,7 +139,7 @@ void get_motifs(GraphInterface& g, size_t k, boost::python::list subgraph_list,
         {
 
             GraphInterface sub;
-            sub.SetDirected(g.GetDirected());
+            sub.set_directed(g.get_directed());
             typedef graph_tool::detail::get_all_graph_views::apply
                 <graph_tool::detail::filt_scalar_type,
                  boost::mpl::bool_<false>, boost::mpl::bool_<false>,

src/graph/community/graph_blockmodel.cc

@@ -179,16 +179,16 @@ boost::any do_create_emat(GraphInterface& gi, boost::any ob,
         vmap_t;
     vmap_t b = any_cast<vmap_t>(ob);
 
-    if (gi.GetDirected())
+    if (gi.get_directed())
     {
         run_action<>()(gi, std::bind<void>(create_emat(), placeholders::_1,
                                            std::ref(b),
-                                           std::ref(bgi.GetGraph()),
+                                           std::ref(bgi.get_graph()),
                                            std::ref(emat)))();
     }
     else
     {
-        UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.GetGraph());
+        UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.get_graph());
         run_action<>()(gi, std::bind<void>(create_emat(), placeholders::_1,
                                            std::ref(b),
                                            std::ref(ug),
@@ -206,17 +206,17 @@ boost::any do_create_ehash(GraphInterface& gi, boost::any ob,
         vmap_t;
     vmap_t b = any_cast<vmap_t>(ob);
 
-    if (gi.GetDirected())
+    if (gi.get_directed())
     {
         run_action<>()(gi, std::bind<void>(create_ehash(), placeholders::_1,
                                            std::ref(b),
-                                           std::ref(bgi.GetGraph()),
+                                           std::ref(bgi.get_graph()),
                                            std::ref(emat),
                                            std::ref(rng)))();
     }
     else
     {
-        UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.GetGraph());
+        UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.get_graph());
         run_action<>()(gi, std::bind<void>(create_ehash(), placeholders::_1,
                                            std::ref(b),
                                            std::ref(ug),
@@ -293,11 +293,11 @@ struct move_sweep_dispatch
         if (is_directed::apply<Graph>::type::value)
         {
             dispatch(mrs, mrp, mrm, wr, b, g, emat, sampler, cavity_sampler,
-                     bgi.GetGraph(), weighted);
+                     bgi.get_graph(), weighted);
         }
         else
         {
-            UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.GetGraph());
+            UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.get_graph());
             dispatch(mrs, mrp, mrm, wr, b, g, emat, sampler, cavity_sampler, ug,
                      weighted);
         }
@@ -489,7 +489,7 @@ boost::python::object do_move_sweep(GraphInterface& gi, GraphInterface& bgi,
                         label, vlist, block_list,
                         target_list, deg_corr, dense, multigraph,
                         beta, sequential, parallel, random_move, c, verbose,
-                        gi.GetMaxEdgeIndex(), nmerges, niter, merge_map,
+                        gi.get_max_edge_index(), nmerges, niter, merge_map,
                         partition_stats, rng, S, nmoves, bgi),
                        mrs, mrp, mrm, wr, b, placeholders::_1,
                        std::ref(emat), sampler, cavity_sampler, weighted))();
@@ -531,11 +531,11 @@ boost::any do_build_egroups(GraphInterface& gi, GraphInterface& bgi,
     boost::any oegroups;
     run_action<graph_tool::detail::all_graph_views, boost::mpl::true_>()
         (gi, std::bind<void>(build_egroups(), b, std::ref(oegroups),
-                             esrcpos.get_unchecked(gi.GetMaxEdgeIndex()),
-                             etgtpos.get_unchecked(gi.GetMaxEdgeIndex()),
-                             eweights.get_unchecked(gi.GetMaxEdgeIndex()),
-                             placeholders::_1, bgi.GetVertexIndex(),
-                             bgi.GetNumberOfVertices(), weighted, empty))();
+                             esrcpos.get_unchecked(gi.get_max_edge_index()),
+                             etgtpos.get_unchecked(gi.get_max_edge_index()),
+                             eweights.get_unchecked(gi.get_max_edge_index()),
+                             placeholders::_1, bgi.get_vertex_index(),
+                             bgi.get_num_vertices(), weighted, empty))();
     return oegroups;
 }
 
@@ -580,7 +580,7 @@ void do_collect_edge_marginals(GraphInterface& gi, GraphInterface& gbi,
     run_action<graph_tool::detail::all_graph_views, boost::mpl::true_>()
         (gi, std::bind<void>(collect_edge_marginals_dispatch(),
                              placeholders::_1, B, b, p,
-                             std::tuple<boost::any, GraphInterface&>(gbi.GetGraphView(), gbi)))();
+                             std::tuple<boost::any, GraphInterface&>(gbi.get_graph_view(), gbi)))();
 }
 
 boost::python::tuple do_bethe_entropy(GraphInterface& gi, size_t B, boost::any op,

src/graph/community/graph_blockmodel_covariates.cc

@@ -151,13 +151,13 @@ struct cov_move_sweep_dispatch
     {
         vector<std::reference_wrapper<Graph>> gs;
         for (GraphInterface& ag : ags)
-            gs.push_back(*any_cast<Graph*>(ag.GetGraphView()));
+            gs.push_back(*any_cast<Graph*>(ag.get_graph_view()));
 
         if (is_directed::apply<Graph>::type::value)
         {
             vector<std::reference_wrapper<GraphInterface::multigraph_t>> bgs;
             for (GraphInterface& bgi : bgis)
-                bgs.push_back(bgi.GetGraph());
+                bgs.push_back(bgi.get_graph());
             dispatch(mrs, mrp, mrm, wr, b, bs, g, gs, emat, sampler,
                      cavity_sampler, bgs, weighted);
         }
@@ -165,7 +165,7 @@ struct cov_move_sweep_dispatch
         {
             vector<UndirectedAdaptor<GraphInterface::multigraph_t>> ubgs;
             for (GraphInterface& bgi : bgis)
-                ubgs.push_back(UndirectedAdaptor<GraphInterface::multigraph_t>(bgi.GetGraph()));
+                ubgs.push_back(UndirectedAdaptor<GraphInterface::multigraph_t>(bgi.get_graph()));
             vector<std::reference_wrapper<UndirectedAdaptor<GraphInterface::multigraph_t>>> rubgs;
             for (auto& bg : ubgs)
                 rubgs.push_back(bg);
@@ -577,7 +577,7 @@ boost::python::object do_cov_move_sweep(GraphInterface& gi,
 
     vector<size_t> eidx;
     for (GraphInterface& g : gis)
-        eidx.push_back(g.GetMaxEdgeIndex());
+        eidx.push_back(g.get_max_edge_index());
 
     auto bgi = from_rlist<GraphInterface>(obgi);
 
@@ -606,7 +606,7 @@ boost::python::object do_cov_move_sweep(GraphInterface& gi,
                         label, vlist, block_list, target_blocks, deg_corr, dense,
                         multigraph, beta, sequential, parallel, random_move,
                         node_coherent, confine_layers, c, verbose,
-                        gi.GetMaxEdgeIndex(), eidx, nmerges, niter, merge_map,
+                        gi.get_max_edge_index(), eidx, nmerges, niter, merge_map,
                         partition_stats, overlap_partition_stats, overlap_stats,
                         master, slave, rng, S, nmoves, bgi, bmap, brmap, free_blocks, B),
                        std::ref(mrs), std::ref(mrp), std::ref(mrm), std::ref(wr),
@@ -653,7 +653,7 @@ void do_ec_hist(GraphInterface& gi, boost::any& aevc, boost::any& aec)
                                      GraphInterface::edge_index_map_t>::type
         emap_t;
     typename emap_t::unchecked_t ec =
-        any_cast<emap_t&>(aec).get_unchecked(gi.GetMaxEdgeIndex());
+        any_cast<emap_t&>(aec).get_unchecked(gi.get_max_edge_index());
     run_action<>()(gi, std::bind<void>(ec_hist(), placeholders::_1,
                                        placeholders::_2, std::ref(ec)),
                    edge_properties())(aevc);

src/graph/community/graph_blockmodel_covariates.hh

@@ -83,7 +83,7 @@ struct split_graph
             auto iter = vhmap[v].find(l);
             if (iter == vhmap[v].end())
             {
-                size_t u = add_vertex(us[l].get().GetGraph());
+                size_t u = add_vertex(us[l].get().get_graph());
                 vhmap[v][l] = u;
                 size_t pos = lower_bound(vc[v].begin(), vc[v].end(), l) - vc[v].begin();
                 vc[v].insert(vc[v].begin() + pos, l);
@@ -124,7 +124,7 @@ struct split_graph
 
             auto u_s = get_v(s, l);
             auto u_t = get_v(t, l);
-            auto ne = add_edge(u_s, u_t, us[l].get().GetGraph()).first;
+            auto ne = add_edge(u_s, u_t, us[l].get().get_graph()).first;
             ueweight[l].get()[ne] = eweight[e];
         }
     }

src/graph/community/graph_blockmodel_overlap.cc

@@ -116,11 +116,11 @@ struct move_sweep_overlap_dispatch
         if (is_directed::apply<Graph>::type::value)
         {
             dispatch(mrs, mrp, mrm, wr, b, g, emat, sampler, cavity_sampler,
-                     bgi.GetGraph(), weighted);
+                     bgi.get_graph(), weighted);
         }
         else
         {
-            UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.GetGraph());
+            UndirectedAdaptor<GraphInterface::multigraph_t> ug(bgi.get_graph());
             dispatch(mrs, mrp, mrm, wr, b, g, emat, sampler, cavity_sampler, ug,
                      weighted);
         }
@@ -324,7 +324,7 @@ do_move_sweep_overlap(GraphInterface& gi, GraphInterface& bgi, boost::any& emat,
                        (eweight, vweight, oegroups, esrcpos, etgtpos,
                         label, vlist, block_list, target_blocks, deg_corr, dense,
                         multigraph, parallel_edges, beta, sequential, parallel,
-                        random_move, c, node_coherent, verbose, gi.GetMaxEdgeIndex(),
+                        random_move, c, node_coherent, verbose, gi.get_max_edge_index(),
                         nmerges, niter, merge_map, overlap_stats, partition_stats,
                         rng, S, nmoves, bgi),
                        mrs, mrp, mrm, wr, b, placeholders::_1,
@@ -476,7 +476,7 @@ void do_get_eg_overlap(GraphInterface& gi, GraphInterface& egi, boost::any obe,
     emap_t eindex = any_cast<emap_t>(oeindex);
 
     run_action<>()(gi, std::bind(get_eg_overlap(), placeholders::_1,
-                                 std::ref(egi.GetGraph()), be, b, node_index,
+                                 std::ref(egi.get_graph()), be, b, node_index,
                                  half_edges, eindex))();
 }
 
@@ -534,7 +534,7 @@ void do_get_be_overlap(GraphInterface& gi, GraphInterface& egi, boost::any obe,
     vimap_t node_index = any_cast<vimap_t>(onode_index);
 
     run_action<>()(gi, std::bind(get_be_overlap(), placeholders::_1,
-                                 std::ref(egi.GetGraph()), be, b,
+                                 std::ref(egi.get_graph()), be, b,
                                  node_index))();
 }
 

src/graph/community/graph_community.cc

@@ -66,7 +66,7 @@ void community_structure(GraphInterface& g, double gamma, string corr_name,
         throw ValueException("invalid correlation type: " + corr_name);
 
     run_action<graph_tool::detail::never_directed>()
-        (g, std::bind(get_communities_selector(corr, g.GetVertexIndex()),
+        (g, std::bind(get_communities_selector(corr, g.get_vertex_index()),
                       placeholders::_1, placeholders::_2, placeholders::_3, gamma, n_iter,
                       make_pair(Tmin, Tmax), Nspins,
                       std::ref(rng), make_pair(verbose,history_file)),

src/graph/community/graph_community_network.cc

@@ -101,7 +101,7 @@ void community_network(GraphInterface& gi, GraphInterface& cgi,
 
     run_action<>()
         (gi, std::bind(get_community_network_vertices_dispatch(),
-                       placeholders::_1, std::ref(cgi.GetGraph()),
+                       placeholders::_1, std::ref(cgi.get_graph()),
                        placeholders::_2, condensed_community_property,
                        placeholders::_3, vertex_count),
          writable_vertex_properties(), vweight_properties())

src/graph/community/graph_community_network_eavg_imp1.cc

@@ -68,7 +68,7 @@ void sum_eprops(GraphInterface& gi, GraphInterface& cgi,
 
     run_action<graph_tool::detail::always_directed>()
         (gi, std::bind(get_edge_sum_dispatch(),
-                       placeholders::_1, std::ref(cgi.GetGraph()),
+                       placeholders::_1, std::ref(cgi.get_graph()),
                        placeholders::_2,
                        condensed_community_property, placeholders::_3, ceprop,
                        self_loops),

src/graph/community/graph_community_network_edges.cc

@@ -76,7 +76,7 @@ void community_network_edges(GraphInterface& gi, GraphInterface& cgi,
 
     run_action<>()
         (gi, std::bind(get_community_network_edges_dispatch(self_loops, parallel_edges),
-                       placeholders::_1, std::ref(cgi.GetGraph()), cgi.GetEdgeIndex(),
+                       placeholders::_1, std::ref(cgi.get_graph()), cgi.get_edge_index(),
                        placeholders::_2, condensed_community_property,
                        placeholders::_3, edge_count),
          writable_vertex_properties(), eweight_properties())

src/graph/community/graph_community_network_vavg.cc

@@ -107,7 +107,7 @@ void community_network_vavg(GraphInterface& gi, GraphInterface& cgi,
             // sum weighted values
             run_action<graph_tool::detail::always_directed_never_reversed>()
                 (gi, std::bind(get_vertex_sum_dispatch(),
-                               placeholders::_1, std::ref(cgi.GetGraph()),
+                               placeholders::_1, std::ref(cgi.get_graph()),
                                placeholders::_2,
                                condensed_community_property,
                                placeholders::_3, cvprop),
@@ -119,7 +119,7 @@ void community_network_vavg(GraphInterface& gi, GraphInterface& cgi,
             // sum unweighted values
             run_action<graph_tool::detail::always_directed_never_reversed>()
                 (gi, std::bind(get_vertex_sum_dispatch(),
-                               placeholders::_1, std::ref(cgi.GetGraph()),
+                               placeholders::_1, std::ref(cgi.get_graph()),
                                placeholders::_2,
                                condensed_community_property,
                                placeholders::_3, cvprop),