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Commit 80692ffd authored by Tiago Peixoto's avatar Tiago Peixoto
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Improve underlying adjacency list implementation 

This changes the underlying adjacency matrix implementation to a single
mixed in + out edge list for each node, instead of separate ones. This
simplifies the undirected_adaptor<> so that its out-edge iterators
become trivial, and also faster.
parent 7f73bc97
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doc/demos/inference/inference.rst
View file @ 80692ffd
......@@ -395,10 +395,10 @@ which shows the number of nodes and groups in all levels:
.. testoutput:: celegans
l: 0, N: 297, B: 13
l: 1, N: 13, B: 5
l: 2, N: 5, B: 2
l: 3, N: 2, B: 1
l: 0, N: 297, B: 15
l: 1, N: 15, B: 7
l: 2, N: 7, B: 4
l: 3, N: 4, B: 1
The hierarchical levels themselves are represented by individual
:meth:`~graph_tool.inference.BlockState` instances obtained via the
......@@ -412,10 +412,10 @@ The hierarchical levels themselves are represented by individual
.. testoutput:: celegans
<BlockState object with 13 blocks (13 nonempty), degree-corrected, for graph <Graph object, directed, with 297 vertices and 2359 edges at 0x...>, at 0x...>
<BlockState object with 5 blocks (5 nonempty), for graph <Graph object, directed, with 13 vertices and 105 edges at 0x...>, at 0x...>
<BlockState object with 2 blocks (2 nonempty), for graph <Graph object, directed, with 5 vertices and 21 edges at 0x...>, at 0x...>
<BlockState object with 1 blocks (1 nonempty), for graph <Graph object, directed, with 2 vertices and 4 edges at 0x...>, at 0x...>
<BlockState object with 15 blocks (15 nonempty), degree-corrected, for graph <Graph object, directed, with 297 vertices and 2359 edges at 0x...>, at 0x...>
<BlockState object with 7 blocks (7 nonempty), for graph <Graph object, directed, with 15 vertices and 116 edges at 0x...>, at 0x...>
<BlockState object with 4 blocks (4 nonempty), for graph <Graph object, directed, with 7 vertices and 38 edges at 0x...>, at 0x...>
<BlockState object with 1 blocks (1 nonempty), for graph <Graph object, directed, with 4 vertices and 16 edges at 0x...>, at 0x...>
This means that we can inspect the hierarchical partition just as before:
......@@ -430,7 +430,7 @@ This means that we can inspect the hierarchical partition just as before:
.. testoutput:: celegans
2
3
1
0
......@@ -455,8 +455,8 @@ case of the `C. elegans` network we have
.. testoutput:: model-selection
:options: +NORMALIZE_WHITESPACE
Non-degree-corrected DL: 8507.97432099
Degree-corrected DL: 8249.76252971
Non-degree-corrected DL: 8477.321131...
Degree-corrected DL: 8265.123659...
Since it yields the smallest description length, the degree-corrected
fit should be preferred. The statistical significance of the choice can
......@@ -482,12 +482,12 @@ fits. In our particular case, we have
.. testoutput:: model-selection
:options: +NORMALIZE_WHITESPACE
ln Λ: -258.211791282
ln Λ: -212.197471...
The precise threshold that should be used to decide when to `reject a
hypothesis <https://en.wikipedia.org/wiki/Hypothesis_testing>`_ is
subjective and context-dependent, but the value above implies that the
particular degree-corrected fit is around :math:`e^{258} \sim 10^{112}`
particular degree-corrected fit is around :math:`e^{258} \sim 10^{92}`
times more likely than the non-degree corrected one, and hence it can be
safely concluded that it provides a substantially better fit.
......@@ -509,12 +509,12 @@ example, for the American football network above, we have:
.. testoutput:: model-selection
:options: +NORMALIZE_WHITESPACE
Non-degree-corrected DL: 1738.71605436
Degree-corrected DL: 1795.27140372
ln Λ: -56.5553493622
Non-degree-corrected DL: 1751.855586...
Degree-corrected DL: 1810.717327...
ln Λ: -58.861740...
Hence, with a posterior odds ratio of :math:`\Lambda \sim e^{-56} \sim
10^{-24}` in favor of the non-degree-corrected model, it seems like the
Hence, with a posterior odds ratio of :math:`\Lambda \sim e^{-58} \sim
10^{-25}` in favor of the non-degree-corrected model, it seems like the
degree-corrected variant is an unnecessarily complex description for
this network.
......@@ -575,8 +575,8 @@ random partition into 20 groups
.. testoutput:: model-averaging
Change in description length: -355.396342...
Number of accepted vertex moves: 4561
Change in description length: -365.968533...
Number of accepted vertex moves: 4519
.. note::
......@@ -599,8 +599,8 @@ random partition into 20 groups
.. testoutput:: model-averaging
Change in description length: 7.34234097...
Number of accepted vertex moves: 3939
Change in description length: 2.998041...
Number of accepted vertex moves: 3677
Although the above is sufficient to implement model averaging, there is a
convenience function called
......@@ -621,60 +621,61 @@ will output:
.. testoutput:: model-averaging
:options: +NORMALIZE_WHITESPACE
niter: 1 count: 0 breaks: 0 min_S: 709.95524 max_S: 726.36140 S: 726.36140 ΔS: 16.4062 moves: 57
niter: 2 count: 1 breaks: 0 min_S: 709.95524 max_S: 726.36140 S: 721.68682 ΔS: -4.67459 moves: 67
niter: 3 count: 0 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 709.37313 ΔS: -12.3137 moves: 47
niter: 4 count: 1 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 711.61100 ΔS: 2.23787 moves: 57
niter: 5 count: 2 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 716.08147 ΔS: 4.47047 moves: 28
niter: 6 count: 3 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 712.93940 ΔS: -3.14207 moves: 47
niter: 7 count: 4 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 712.38780 ΔS: -0.551596 moves: 46
niter: 8 count: 5 breaks: 0 min_S: 709.37313 max_S: 726.36140 S: 718.00449 ΔS: 5.61668 moves: 40
niter: 9 count: 0 breaks: 0 min_S: 709.37313 max_S: 731.89940 S: 731.89940 ΔS: 13.8949 moves: 50
niter: 10 count: 0 breaks: 0 min_S: 707.07048 max_S: 731.89940 S: 707.07048 ΔS: -24.8289 moves: 45
niter: 11 count: 1 breaks: 0 min_S: 707.07048 max_S: 731.89940 S: 711.91030 ΔS: 4.83982 moves: 31
niter: 12 count: 2 breaks: 0 min_S: 707.07048 max_S: 731.89940 S: 726.56358 ΔS: 14.6533 moves: 56
niter: 13 count: 3 breaks: 0 min_S: 707.07048 max_S: 731.89940 S: 731.77165 ΔS: 5.20807 moves: 72
niter: 14 count: 4 breaks: 0 min_S: 707.07048 max_S: 731.89940 S: 707.08606 ΔS: -24.6856 moves: 57
niter: 15 count: 0 breaks: 0 min_S: 707.07048 max_S: 735.85102 S: 735.85102 ΔS: 28.7650 moves: 65
niter: 16 count: 1 breaks: 0 min_S: 707.07048 max_S: 735.85102 S: 707.29116 ΔS: -28.5599 moves: 43
niter: 17 count: 0 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 702.18860 ΔS: -5.10256 moves: 39
niter: 18 count: 1 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 716.40444 ΔS: 14.2158 moves: 55
niter: 19 count: 2 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 703.51896 ΔS: -12.8855 moves: 32
niter: 20 count: 3 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 714.30455 ΔS: 10.7856 moves: 34
niter: 21 count: 4 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 707.26722 ΔS: -7.03733 moves: 25
niter: 22 count: 5 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 730.23976 ΔS: 22.9725 moves: 21
niter: 23 count: 6 breaks: 0 min_S: 702.18860 max_S: 735.85102 S: 730.56562 ΔS: 0.325858 moves: 59
niter: 24 count: 0 breaks: 0 min_S: 702.18860 max_S: 738.45136 S: 738.45136 ΔS: 7.88574 moves: 60
niter: 25 count: 0 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 740.29015 ΔS: 1.83879 moves: 88
niter: 26 count: 1 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 720.86367 ΔS: -19.4265 moves: 68
niter: 27 count: 2 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 723.60308 ΔS: 2.73941 moves: 48
niter: 28 count: 3 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 732.81310 ΔS: 9.21002 moves: 44
niter: 29 count: 4 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 729.62283 ΔS: -3.19028 moves: 62
niter: 30 count: 5 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 730.15676 ΔS: 0.533935 moves: 59
niter: 31 count: 6 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 728.27350 ΔS: -1.88326 moves: 65
niter: 32 count: 7 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 732.19406 ΔS: 3.92056 moves: 57
niter: 33 count: 8 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 730.53906 ΔS: -1.65500 moves: 72
niter: 34 count: 9 breaks: 0 min_S: 702.18860 max_S: 740.29015 S: 725.59638 ΔS: -4.94268 moves: 72
niter: 35 count: 0 breaks: 1 min_S: 733.07687 max_S: 733.07687 S: 733.07687 ΔS: 7.48049 moves: 54
niter: 36 count: 0 breaks: 1 min_S: 728.56326 max_S: 733.07687 S: 728.56326 ΔS: -4.51361 moves: 57
niter: 37 count: 0 breaks: 1 min_S: 728.56326 max_S: 755.55140 S: 755.55140 ΔS: 26.9881 moves: 83
niter: 38 count: 0 breaks: 1 min_S: 728.56326 max_S: 761.09434 S: 761.09434 ΔS: 5.54294 moves: 96
niter: 39 count: 0 breaks: 1 min_S: 713.60740 max_S: 761.09434 S: 713.60740 ΔS: -47.4869 moves: 71
niter: 40 count: 1 breaks: 1 min_S: 713.60740 max_S: 761.09434 S: 713.98904 ΔS: 0.381637 moves: 67
niter: 41 count: 2 breaks: 1 min_S: 713.60740 max_S: 761.09434 S: 729.22460 ΔS: 15.2356 moves: 68
niter: 42 count: 3 breaks: 1 min_S: 713.60740 max_S: 761.09434 S: 724.70143 ΔS: -4.52317 moves: 69
niter: 43 count: 0 breaks: 1 min_S: 703.51896 max_S: 761.09434 S: 703.51896 ΔS: -21.1825 moves: 40
niter: 44 count: 0 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 702.85027 ΔS: -0.668696 moves: 33
niter: 45 count: 1 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 722.46508 ΔS: 19.6148 moves: 49
niter: 46 count: 2 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 714.77930 ΔS: -7.68578 moves: 62
niter: 47 count: 3 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 722.04551 ΔS: 7.26621 moves: 55
niter: 48 count: 4 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 708.96879 ΔS: -13.0767 moves: 37
niter: 49 count: 5 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 714.84009 ΔS: 5.87130 moves: 37
niter: 50 count: 6 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 718.28558 ΔS: 3.44549 moves: 55
niter: 51 count: 7 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 720.86398 ΔS: 2.57840 moves: 44
niter: 52 count: 8 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 710.93672 ΔS: -9.92726 moves: 45
niter: 53 count: 9 breaks: 1 min_S: 702.85027 max_S: 761.09434 S: 735.06773 ΔS: 24.1310 moves: 28
niter: 54 count: 10 breaks: 2 min_S: 702.85027 max_S: 761.09434 S: 738.16756 ΔS: 3.09983 moves: 115
niter: 1 count: 0 breaks: 0 min_S: 703.03618 max_S: 703.45134 S: 703.45134 ΔS: 0.415156 moves: 25
niter: 2 count: 1 breaks: 0 min_S: 703.03618 max_S: 703.45134 S: 703.21595 ΔS: -0.235390 moves: 24
niter: 3 count: 0 breaks: 0 min_S: 701.19994 max_S: 703.45134 S: 701.19994 ΔS: -2.01601 moves: 39
niter: 4 count: 0 breaks: 0 min_S: 701.19994 max_S: 713.75408 S: 713.75408 ΔS: 12.5541 moves: 27
niter: 5 count: 0 breaks: 0 min_S: 698.96330 max_S: 713.75408 S: 698.96330 ΔS: -14.7908 moves: 31
niter: 6 count: 1 breaks: 0 min_S: 698.96330 max_S: 713.75408 S: 709.99719 ΔS: 11.0339 moves: 25
niter: 7 count: 0 breaks: 0 min_S: 698.96330 max_S: 714.31276 S: 714.31276 ΔS: 4.31558 moves: 33
niter: 8 count: 0 breaks: 0 min_S: 698.96330 max_S: 723.31550 S: 723.31550 ΔS: 9.00274 moves: 45
niter: 9 count: 1 breaks: 0 min_S: 698.96330 max_S: 723.31550 S: 707.76847 ΔS: -15.5470 moves: 44
niter: 10 count: 2 breaks: 0 min_S: 698.96330 max_S: 723.31550 S: 704.04928 ΔS: -3.71920 moves: 27
niter: 11 count: 3 breaks: 0 min_S: 698.96330 max_S: 723.31550 S: 717.27141 ΔS: 13.2221 moves: 41
niter: 12 count: 0 breaks: 0 min_S: 698.96330 max_S: 726.10427 S: 726.10427 ΔS: 8.83286 moves: 50
niter: 13 count: 1 breaks: 0 min_S: 698.96330 max_S: 726.10427 S: 704.29296 ΔS: -21.8113 moves: 46
niter: 14 count: 2 breaks: 0 min_S: 698.96330 max_S: 726.10427 S: 700.93097 ΔS: -3.36199 moves: 28
niter: 15 count: 0 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 697.90951 ΔS: -3.02146 moves: 12
niter: 16 count: 1 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 711.09915 ΔS: 13.1896 moves: 19
niter: 17 count: 2 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 708.19531 ΔS: -2.90384 moves: 30
niter: 18 count: 3 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 703.07873 ΔS: -5.11658 moves: 34
niter: 19 count: 4 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 709.34044 ΔS: 6.26171 moves: 23
niter: 20 count: 5 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 704.57077 ΔS: -4.76967 moves: 19
niter: 21 count: 6 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 711.97667 ΔS: 7.40590 moves: 40
niter: 22 count: 7 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 710.58775 ΔS: -1.38892 moves: 54
niter: 23 count: 8 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 702.61903 ΔS: -7.96872 moves: 31
niter: 24 count: 9 breaks: 0 min_S: 697.90951 max_S: 726.10427 S: 706.06001 ΔS: 3.44098 moves: 24
niter: 25 count: 0 breaks: 1 min_S: 711.64522 max_S: 711.64522 S: 711.64522 ΔS: 5.58521 moves: 33
niter: 26 count: 0 breaks: 1 min_S: 710.56094 max_S: 711.64522 S: 710.56094 ΔS: -1.08428 moves: 30
niter: 27 count: 0 breaks: 1 min_S: 710.56094 max_S: 712.46103 S: 712.46103 ΔS: 1.90009 moves: 46
niter: 28 count: 0 breaks: 1 min_S: 707.57080 max_S: 712.46103 S: 707.57080 ΔS: -4.89023 moves: 34
niter: 29 count: 0 breaks: 1 min_S: 707.57080 max_S: 722.00778 S: 722.00778 ΔS: 14.4370 moves: 27
niter: 30 count: 0 breaks: 1 min_S: 707.57080 max_S: 734.73745 S: 734.73745 ΔS: 12.7297 moves: 50
niter: 31 count: 1 breaks: 1 min_S: 707.57080 max_S: 734.73745 S: 719.44750 ΔS: -15.2900 moves: 46
niter: 32 count: 2 breaks: 1 min_S: 707.57080 max_S: 734.73745 S: 711.99566 ΔS: -7.45184 moves: 48
niter: 33 count: 0 breaks: 1 min_S: 704.17177 max_S: 734.73745 S: 704.17177 ΔS: -7.82389 moves: 48
niter: 34 count: 0 breaks: 1 min_S: 703.43809 max_S: 734.73745 S: 703.43809 ΔS: -0.733679 moves: 44
niter: 35 count: 1 breaks: 1 min_S: 703.43809 max_S: 734.73745 S: 715.43913 ΔS: 12.0010 moves: 31
niter: 36 count: 2 breaks: 1 min_S: 703.43809 max_S: 734.73745 S: 708.54508 ΔS: -6.89406 moves: 31
niter: 37 count: 0 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 697.63193 ΔS: -10.9131 moves: 17
niter: 38 count: 1 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 716.87544 ΔS: 19.2435 moves: 25
niter: 39 count: 2 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 706.87316 ΔS: -10.0023 moves: 32
niter: 40 count: 3 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 709.13483 ΔS: 2.26166 moves: 38
niter: 41 count: 4 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 703.48652 ΔS: -5.64830 moves: 35
niter: 42 count: 5 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 710.13765 ΔS: 6.65113 moves: 24
niter: 43 count: 6 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 713.00298 ΔS: 2.86533 moves: 46
niter: 44 count: 7 breaks: 1 min_S: 697.63193 max_S: 734.73745 S: 699.51434 ΔS: -13.4886 moves: 39
niter: 45 count: 0 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 734.94974 ΔS: 35.4354 moves: 40
niter: 46 count: 1 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 709.94102 ΔS: -25.0087 moves: 64
niter: 47 count: 2 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 715.21111 ΔS: 5.27009 moves: 62
niter: 48 count: 3 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 726.59326 ΔS: 11.3822 moves: 89
niter: 49 count: 4 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 700.21105 ΔS: -26.3822 moves: 51
niter: 50 count: 5 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 715.11949 ΔS: 14.9084 moves: 32
niter: 51 count: 6 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 712.70602 ΔS: -2.41347 moves: 38
niter: 52 count: 7 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 715.03487 ΔS: 2.32885 moves: 40
niter: 53 count: 8 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 703.76698 ΔS: -11.2679 moves: 33
niter: 54 count: 9 breaks: 1 min_S: 697.63193 max_S: 734.94974 S: 708.25232 ΔS: 4.48535 moves: 38
niter: 55 count: 10 breaks: 2 min_S: 697.63193 max_S: 734.94974 S: 703.30308 ΔS: -4.94924 moves: 22
Note that the value of ``wait`` above was made purposefully low so that
the output would not be overly long. The most appropriate value requires
......@@ -802,8 +803,7 @@ network as above.
.. testoutput:: nested-model-averaging
Change in description length: 6.222068...
Number of accepted vertex moves: 7615
Change in description length: 4.770959...
Similarly to the the non-nested case, we can use
:func:`~graph_tool.inference.mcmc_equilibrate` to do most of the boring
......@@ -1068,8 +1068,8 @@ evidence efficiently, as we show below, using
.. testoutput:: model-evidence
Model evidence for deg_corr = True: -575.889667037 (mean field), -794.733483508 (Bethe)
Model evidence for deg_corr = False: -618.120673252 (mean field), -729.104723167 (Bethe)
Model evidence for deg_corr = True: -572.438723317 (mean field), -817.711546614 (Bethe)
Model evidence for deg_corr = False: -595.279671328 (mean field), -721.324905971 (Bethe)
If we consider the more accurate approximation, the outcome shows a
preference for the non-degree-corrected model.
......@@ -1133,8 +1133,8 @@ approach for the same network, using the nested model.
.. testoutput:: model-evidence
Model evidence for deg_corr = True: -333.948404832 (mean field), -651.91054824 (Bethe)
Model evidence for deg_corr = False: -360.235692786 (mean field), -549.293909028 (Bethe)
Model evidence for deg_corr = True: -376.050449701 (mean field), -569.119296537 (Bethe)
Model evidence for deg_corr = False: -395.475065061 (mean field), -555.449191199 (Bethe)
The results are similar: If we consider the most accurate approximation,
the non-degree-corrected model possesses the largest evidence. Note also
......
doc/quickstart.rst
View file @ 80692ffd
......@@ -314,15 +314,6 @@ and :meth:`~graph_tool.Vertex.in_neighbours` methods, respectively.
The code above will print the out-edges and out-neighbours of all
vertices in the graph.
.. note::
The ordering of the vertices and edges visited by the iterators is
always the same as the order in which they were added to the graph
(with the exception of the iterator returned by
:meth:`~graph_tool.Graph.edges`). Usually, algorithms do not care
about this order, but if it is ever needed, this inherent ordering
can be relied upon.
.. warning::
You should never remove vertex or edge descriptors when iterating
......
src/boost-workaround/boost/graph/filtered_graph.hpp deleted 100644 → 0
View file @ 7f73bc97
This diff is collapsed.
src/boost-workaround/boost/graph/reverse_graph_alt.hpp deleted 100644 → 0
View file @ 7f73bc97
// (C) Copyright David Abrahams 2000.
// Distributed under the Boost Software License, Version 1.0. (See
// accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
#ifndef REVERSE_GRAPH_DWA092300_H_
# define REVERSE_GRAPH_DWA092300_H_
#include <boost/graph/adjacency_iterator.hpp>
#include <boost/graph/properties.hpp>
#include <boost/iterator/transform_iterator.hpp>
#include <boost/tuple/tuple.hpp>
#include <boost/type_traits.hpp>
#include <boost/mpl/if.hpp>
#include <functional>
#if BOOST_WORKAROUND(BOOST_MSVC, < 1300)
// Stay out of the way of the concept checking class
# define BidirectionalGraph BidirectionalGraph_
#endif
namespace boost {
struct reverse_graph_tag { };
namespace detail {
template <typename EdgeDesc>
class reverse_graph_edge_descriptor: public EdgeDesc {
public:
typedef EdgeDesc base_t;
explicit reverse_graph_edge_descriptor(const EdgeDesc& underlying_desc = EdgeDesc())
: base_t(underlying_desc) {}
};
template <typename EdgeDesc>
struct reverse_graph_edge_descriptor_maker {
typedef reverse_graph_edge_descriptor<EdgeDesc> result_type;
reverse_graph_edge_descriptor<EdgeDesc> operator()(const EdgeDesc& ed) const {
return reverse_graph_edge_descriptor<EdgeDesc>(ed);
}
};
template <typename EdgeDesc, typename Iter>
std::pair<transform_iterator<reverse_graph_edge_descriptor_maker<EdgeDesc>, Iter>,
transform_iterator<reverse_graph_edge_descriptor_maker<EdgeDesc>, Iter> >
reverse_edge_iter_pair(const std::pair<Iter, Iter>& ip) {
return std::make_pair(make_transform_iterator(ip.first, reverse_graph_edge_descriptor_maker<EdgeDesc>()),
make_transform_iterator(ip.second, reverse_graph_edge_descriptor_maker<EdgeDesc>()));
}
template <bool isEdgeList> struct choose_rev_edge_iter { };
template <> struct choose_rev_edge_iter<true> {
template <class G> struct bind_ {
typedef transform_iterator<reverse_graph_edge_descriptor_maker<typename graph_traits<G>::edge_descriptor>, typename graph_traits<G>::edge_iterator> type;
};
};
template <> struct choose_rev_edge_iter<false> {
template <class G> struct bind_ {
typedef void type;
};
};
} // namespace detail
template <class BidirectionalGraph, class GraphRef = const BidirectionalGraph&>
class reverse_graph {
typedef reverse_graph<BidirectionalGraph, GraphRef> Self;
typedef graph_traits<BidirectionalGraph> Traits;
public:
typedef BidirectionalGraph base_type;
// Constructor
reverse_graph(GraphRef g) : m_g(g) {}
// Graph requirements
typedef typename Traits::vertex_descriptor vertex_descriptor;
typedef detail::reverse_graph_edge_descriptor<typename Traits::edge_descriptor> edge_descriptor;
typedef typename Traits::directed_category directed_category;
typedef typename Traits::edge_parallel_category edge_parallel_category;
typedef typename Traits::traversal_category traversal_category;
// IncidenceGraph requirements
typedef transform_iterator<detail::reverse_graph_edge_descriptor_maker<typename Traits::edge_descriptor>, typename Traits::in_edge_iterator> out_edge_iterator;
typedef typename Traits::degree_size_type degree_size_type;
// BidirectionalGraph requirements
typedef transform_iterator<detail::reverse_graph_edge_descriptor_maker<typename Traits::edge_descriptor>, typename Traits::out_edge_iterator> in_edge_iterator;
// AdjacencyGraph requirements
typedef typename BidirectionalGraph::in_adjacency_iterator adjacency_iterator;
typedef typename graph_traits<BidirectionalGraph>::adjacency_iterator in_adjacency_iterator;
// VertexListGraph requirements
typedef typename Traits::vertex_iterator vertex_iterator;
// EdgeListGraph requirements
enum { is_edge_list = is_convertible<traversal_category,
edge_list_graph_tag>::value };
typedef detail::choose_rev_edge_iter<is_edge_list> ChooseEdgeIter;
typedef typename ChooseEdgeIter::
template bind_<BidirectionalGraph>::type edge_iterator;
typedef typename Traits::vertices_size_type vertices_size_type;
typedef typename Traits::edges_size_type edges_size_type;
typedef reverse_graph_tag graph_tag;
#ifndef BOOST_GRAPH_NO_BUNDLED_PROPERTIES
// Bundled properties support
template<typename Descriptor>
typename graph::detail::bundled_result<BidirectionalGraph, Descriptor>::type&
operator[](Descriptor x)
{ return m_g[x]; }
template<typename Descriptor>
typename graph::detail::bundled_result<BidirectionalGraph, Descriptor>::type const&
operator[](Descriptor x) const
{ return m_g[x]; }
#endif // BOOST_GRAPH_NO_BUNDLED_PROPERTIES
static vertex_descriptor null_vertex()
{ return Traits::null_vertex(); }
// would be private, but template friends aren't portable enough.
// private:
GraphRef m_g;
};
// These are separate so they are not instantiated unless used (see bug 1021)
template <class BidirectionalGraph, class GraphRef>
struct vertex_property_type<reverse_graph<BidirectionalGraph, GraphRef> > {
typedef typename boost::vertex_property_type<BidirectionalGraph>::type type;
};
template <class BidirectionalGraph, class GraphRef>
struct edge_property_type<reverse_graph<BidirectionalGraph, GraphRef> > {
typedef typename boost::edge_property_type<BidirectionalGraph>::type type;
};
template <class BidirectionalGraph, class GraphRef>
struct graph_property_type<reverse_graph<BidirectionalGraph, GraphRef> > {
typedef typename boost::graph_property_type<BidirectionalGraph>::type type;
};
#ifndef BOOST_GRAPH_NO_BUNDLED_PROPERTIES
template<typename Graph, typename GraphRef>
struct vertex_bundle_type<reverse_graph<Graph, GraphRef> >
: vertex_bundle_type<Graph> { };
template<typename Graph, typename GraphRef>
struct edge_bundle_type<reverse_graph<Graph, GraphRef> >
: edge_bundle_type<Graph> { };
template<typename Graph, typename GraphRef>
struct graph_bundle_type<reverse_graph<Graph, GraphRef> >
: graph_bundle_type<Graph> { };
#endif // BOOST_GRAPH_NO_BUNDLED_PROPERTIES
template <class BidirectionalGraph>
inline reverse_graph<BidirectionalGraph>
make_reverse_graph(const BidirectionalGraph& g)
{
return reverse_graph<BidirectionalGraph>(g);
}
template <class BidirectionalGraph>
inline reverse_graph<BidirectionalGraph, BidirectionalGraph&>
make_reverse_graph(BidirectionalGraph& g)
{
return reverse_graph<BidirectionalGraph, BidirectionalGraph&>(g);
}
template <class BidirectionalGraph, class GRef>
std::pair<typename reverse_graph<BidirectionalGraph>::vertex_iterator,
typename reverse_graph<BidirectionalGraph>::vertex_iterator>
vertices(const reverse_graph<BidirectionalGraph,GRef>& g)
{
return vertices(g.m_g);
}
template <class BidirectionalGraph, class GRef>
std::pair<typename reverse_graph<BidirectionalGraph>::edge_iterator,
typename reverse_graph<BidirectionalGraph>::edge_iterator>
edges(const reverse_graph<BidirectionalGraph,GRef>& g)
{
return detail::reverse_edge_iter_pair<typename graph_traits<BidirectionalGraph>::edge_descriptor>(edges(g.m_g));
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph>::out_edge_iterator,
typename reverse_graph<BidirectionalGraph>::out_edge_iterator>
out_edges(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return detail::reverse_edge_iter_pair<typename graph_traits<BidirectionalGraph>::edge_descriptor>(in_edges(u, g.m_g));
}
template <class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::vertices_size_type
num_vertices(const reverse_graph<BidirectionalGraph,GRef>& g)
{
return num_vertices(g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline typename reverse_graph<BidirectionalGraph>::edges_size_type
num_edges(const reverse_graph<BidirectionalGraph,GRef>& g)
{
return num_edges(g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::degree_size_type
out_degree(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return in_degree(u, g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::vertex_descriptor
vertex(const typename graph_traits<BidirectionalGraph>::vertices_size_type v,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return vertex(v, g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph>::edge_descriptor,
bool>
edge(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const typename graph_traits<BidirectionalGraph>::vertex_descriptor v,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
typedef typename reverse_graph<BidirectionalGraph>::edge_descriptor e_t;
auto e = edge(v, u, g.m_g);
return std::make_pair(e_t(e.first), e.second);
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph>::in_edge_iterator,
typename reverse_graph<BidirectionalGraph>::in_edge_iterator>
in_edges(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return detail::reverse_edge_iter_pair<typename graph_traits<BidirectionalGraph>::edge_descriptor>(out_edges(u, g.m_g));
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph,GRef>::adjacency_iterator,
typename reverse_graph<BidirectionalGraph,GRef>::adjacency_iterator>
out_neighbours(typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return in_neighbours(u, g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph,GRef>::in_adjacency_iterator,
typename reverse_graph<BidirectionalGraph,GRef>::in_adjacency_iterator>
in_neighbours(typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return out_neighbours(u, g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline std::pair<typename reverse_graph<BidirectionalGraph,GRef>::adjacency_iterator,
typename reverse_graph<BidirectionalGraph,GRef>::adjacency_iterator>
adjacent_vertices(typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return out_neighbours(u, g);
}
template <class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::degree_size_type
in_degree(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return out_degree(u, g.m_g);
}
template <class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::degree_size_type
degree(const typename graph_traits<BidirectionalGraph>::vertex_descriptor u,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return degree(u, g.m_g);
}
template <class Edge, class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::vertex_descriptor
source(const detail::reverse_graph_edge_descriptor<Edge>& e,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return target(Edge(e), g.m_g);
}
template <class Edge, class BidirectionalGraph, class GRef>
inline typename graph_traits<BidirectionalGraph>::vertex_descriptor
target(const detail::reverse_graph_edge_descriptor<Edge>& e,
const reverse_graph<BidirectionalGraph,GRef>& g)
{
return source(Edge(e), g.m_g);
}
namespace detail {
template <typename PM>
struct reverse_graph_edge_property_map {
private:
PM underlying_pm;
public:
typedef reverse_graph_edge_descriptor<typename property_traits<PM>::key_type> key_type;
typedef typename property_traits<PM>::value_type value_type;
typedef typename property_traits<PM>::reference reference;
typedef typename property_traits<PM>::category category;