Remove deprecated Python 2 compatibility

src/graph_tool/all.py

@@ -22,7 +22,6 @@
 Utility module which includes all the sub-modules in graph_tool
 """
 
-from __future__ import division, absolute_import, print_function
 import warnings
 
 from graph_tool import *

src/graph_tool/centrality/__init__.py

@@ -44,14 +44,11 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_centrality")
 
 from .. import _prop, ungroup_vector_property, Vector_size_t
 from .. topology import shortest_distance
-import sys
 import numpy
 import numpy.linalg
 
@@ -514,8 +511,6 @@ def central_point_dominance(g, betweenness):
     Examples
     --------
 
-    .. doctest:: central_point_dominance
-
     >>> g = gt.collection.data["polblogs"]
     >>> g = gt.GraphView(g, vfilt=gt.label_largest_component(g))
     >>> vp, ep = gt.betweenness(g)

src/graph_tool/clustering/__init__.py

@@ -41,8 +41,6 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_clustering as _gt")
 
@@ -54,7 +52,6 @@ from .. stats import vertex_hist
 from collections import defaultdict
 from numpy import *
 from numpy import random
-import sys
 
 __all__ = ["local_clustering", "global_clustering", "extended_clustering",
            "motifs", "motif_significance"]

src/graph_tool/collection/__init__.py

@@ -264,11 +264,6 @@ Contents
 
 """
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 import os.path
 import textwrap
 from .. import load_graph

src/graph_tool/collection/konect.py

@@ -18,28 +18,10 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 import os.path
 import tempfile
-if sys.version_info < (3,):
-    from urllib2 import urlopen, URLError
-    import shutil
-    class TemporaryDirectory(object):
-        def __init__(self, suffix="", prefix="", dir=None):
-            self.name = tempfile.mkdtemp(suffix, prefix, dir)
-
-        def __enter__(self):
-            return self.name
-
-        def __exit__(self, exc, value, tb):
-            shutil.rmtree(self.name)
-else:
-    from urllib.request import urlopen, URLError
-    from tempfile import TemporaryDirectory
+from urllib.request import urlopen, URLError
+from tempfile import TemporaryDirectory
 import tarfile
 import warnings
 import numpy

src/graph_tool/correlations/__init__.py

@@ -39,8 +39,6 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_correlations")
 

src/graph_tool/decorators.py

@@ -21,11 +21,8 @@
 Some useful decorators
 """
 
-from __future__ import division, absolute_import, print_function
-
 import inspect
 import functools
-import sys
 import types
 
 ################################################################################
@@ -33,48 +30,7 @@ import types
 # Some useful function decorators which will be used
 ################################################################################
 
-# exec statement in python 2.7 and exec() function in 3.2 are mutually exclusive
-if sys.hexversion > 0x03000000:
-    def exec_function(source, filename, global_map):
-        exec(compile(source, filename, "exec"), global_map)
-else:
-    eval(compile("""\
-def exec_function(source, filename, global_map):
-    exec compile(source, filename, "exec") in global_map
-""","<exec_function>", "exec"))
-
-
-if sys.hexversion > 0x03000000:
-    _wraps = functools.wraps
-else:
-    def _wraps(func):
-        """This decorator works like the functools.wraps meta-decorator, but
-        also preserves the function's argument signature. This uses eval, and is
-        thus a bit of a hack, but there no better way I know of to do this."""
-        def decorate(f):
-            argspec = inspect.getfullargspec(func)
-            ___wrap_defaults = defaults = argspec[-1]
-            if defaults is not None:
-                def_string = ["___wrap_defaults[%d]" % d for
-                              d in range(len(defaults))]
-                def_names = argspec[0][-len(defaults):]
-            else:
-                def_string = None
-                def_names = None
-            args_call = inspect.formatargspec(argspec[0], defaults=def_names)
-            argspec = inspect.formatargspec(argspec[0], defaults=def_string)
-            argspec = argspec.lstrip("(").rstrip(")")
-            wf = "def %s(%s):\n    return f%s\n" % \
-                (func.__name__, argspec, args_call)
-            if def_string is not None:
-                for d in def_string:
-                    wf = wf.replace("'%s'" % d, "%s" % d)
-                for d in def_names:
-                    wf = wf.replace("'%s'" % d, "%s" % d)
-            exec_function(wf, __file__, locals())
-            return functools.wraps(func)(locals()[func.__name__])
-        return decorate
-
+_wraps = functools.wraps
 
 def _attrs(**kwds):
     """Decorator which adds arbitrary attributes to methods"""

src/graph_tool/dl_import.py

@@ -18,8 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-
 import sys
 import os.path
 

src/graph_tool/draw/__init__.py

@@ -66,8 +66,6 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. import Graph, GraphView, _check_prop_vector, _check_prop_scalar, \
     group_vector_property, ungroup_vector_property, infect_vertex_property, \
     _prop, _get_rng
@@ -78,7 +76,6 @@ from .. stats import label_parallel_edges
 from .. generation import predecessor_tree, condensation_graph
 import numpy.random
 from numpy import sqrt
-import sys
 
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_layout")

src/graph_tool/draw/cairo_draw.py

@@ -18,13 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-else:
-    unicode = str
-
 import os
 import warnings
 import numpy
@@ -237,7 +230,7 @@ def shape_from_prop(shape, enum):
             prop.fa %= rg[1] - rg[0] + 1
             prop.fa += rg[0]
         return prop
-    if isinstance(shape, (str, unicode)):
+    if isinstance(shape, str):
         return int(getattr(enum, shape))
     else:
         return shape
@@ -301,7 +294,7 @@ def surface_from_prop(surface):
                                  surface.value_type())
         return prop
 
-    if isinstance(surface, (str, unicode)):
+    if isinstance(surface, str):
         return gen_surface(surface)
     elif isinstance(surface, cairo.Surface) or surface is None:
         return surface
@@ -409,7 +402,7 @@ def _convert(attr, val, cmap, pmap_default=False, g=None, k=None):
             new_val = val
         elif isinstance(val, (tuple, np.ndarray)):
             new_val = list(val)
-        elif isinstance(val, (str, unicode)):
+        elif isinstance(val, str):
             new_val = list(color_converter.to_rgba(val))
         elif isinstance(val, PropertyMap):
             if val.value_type() in ["vector<double>", "vector<long double>"]:
@@ -708,7 +701,7 @@ def color_contrast(color):
 
 def auto_colors(g, bg, pos, back):
     if not isinstance(bg, PropertyMap):
-        if isinstance(bg, (str, unicode)):
+        if isinstance(bg, str):
             bg = color_converter.to_rgba(bg)
         bg = g.new_vertex_property("vector<double>", val=bg)
     if not isinstance(pos, PropertyMap):
@@ -1146,7 +1139,7 @@ def graph_draw(g, pos=None, vprops=None, eprops=None, vorder=None, eorder=None,
             x, y, zoom = x, y, 1
 
 
-        if isinstance(output, (str, unicode)):
+        if isinstance(output, str):
             out, auto_fmt = open_file(output, mode="wb")
         else:
             out = output

src/graph_tool/draw/graphviz_draw.py

@@ -18,13 +18,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-
 import sys
-if sys.version_info < (3,):
-    range = xrange
-else:
-    unicode = str
 import os
 import os.path
 import time
@@ -32,7 +26,7 @@ import warnings
 import ctypes
 import ctypes.util
 import tempfile
-from .. import PropertyMap, group_vector_property, ungroup_vector_property, _c_str
+from .. import PropertyMap, group_vector_property, ungroup_vector_property
 import numpy
 import numpy.random
 import copy
@@ -441,12 +435,12 @@ def graphviz_draw(g, pos=None, size=(15, 15), pin=False, layout=None,
             aset(n, "style", "filled")
             aset(n, "color", "#2e3436")
             # apply color
-            if isinstance(vcolor, (str, unicode)):
-                aset(n, "fillcolor", _c_str(vcolor))
+            if isinstance(vcolor, str):
+                aset(n, "fillcolor", vcolor)
             else:
                 color = vcolor[v]
-                if isinstance(color, (str, unicode)):
-                    aset(n, "fillcolor", _c_str(color))
+                if isinstance(color, str):
+                    aset(n, "fillcolor", color)
                 else:
                     color = tuple([int(c * 255.0) for c in vcmap(vnorm(color))])
                     aset(n, "fillcolor", "#%.2x%.2x%.2x%.2x" % color)
@@ -492,12 +486,12 @@ def graphviz_draw(g, pos=None, size=(15, 15), pin=False, layout=None,
                 aset(ge, "dir", "none")
 
             # apply color
-            if isinstance(ecolor, (str, unicode)):
-                aset(ge, "color", _c_str(ecolor))
+            if isinstance(ecolor, str):
+                aset(ge, "color", ecolor)
             else:
                 color = ecolor[e]
-                if isinstance(color, (str, unicode)):
-                    aset(ge, "color", _c_str(color))
+                if isinstance(color, str):
+                    aset(ge, "color", color)
                 else:
                     color = tuple([int(c * 255.0) for c in ecmap(enorm(color))])
                     aset(ge, "color", "#%.2x%.2x%.2x%.2x" % color)

src/graph_tool/draw/gtk_draw.py

@@ -18,8 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-
 import numpy
 
 from .. import GraphView, PropertyMap, VertexPropertyMap, \

src/graph_tool/dynamics/__init__.py

@@ -67,8 +67,6 @@ Contents
 
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. import _degree, _prop, Graph, GraphView, _get_rng, PropertyMap, \
     EdgePropertyMap, VertexPropertyMap, _check_prop_scalar
 from .. stats import label_self_loops

src/graph_tool/flow/__init__.py

@@ -77,8 +77,6 @@ The following network will be used as an example throughout the documentation.
 
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_flow")
 

src/graph_tool/generation/__init__.py

@@ -48,16 +48,11 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_generation")
 
 from .. import Graph, GraphView, _check_prop_scalar, _prop, _limit_args, \
-    _gt_type, _get_rng, _c_str, libcore, Vector_double
+    _gt_type, _get_rng, libcore, Vector_double
 from .. stats import label_parallel_edges, label_self_loops
 import inspect
 import types
@@ -805,7 +800,7 @@ def random_rewire(g, model="configuration", n_iter=1, edge_sweep=True,
     if not fast:
         g.set_fast_edge_removal(True)
     pcount = libgraph_tool_generation.random_rewire(g._Graph__graph,
-                                                    _c_str(model),
+                                                    model,
                                                     n_iter, not edge_sweep,
                                                     self_loops, parallel_edges,
                                                     configuration, traditional,
@@ -1763,7 +1758,7 @@ def triangulation(points, type="simple", periodic=False):
     g = Graph(directed=False)
     pos = g.new_vertex_property("vector<double>")
     libgraph_tool_generation.triangulation(g._Graph__graph, points,
-                                           _prop("v", g, pos), _c_str(type),
+                                           _prop("v", g, pos), type,
                                            periodic)
     return g, pos
 

src/graph_tool/gt_io.py

@@ -18,12 +18,9 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-
 import pickle
 import base64
 import atexit
-import sys
 from io import BytesIO
 from . import libgraph_tool_core
 
@@ -72,8 +69,6 @@ def pickler(stream, obj):
 def unpickler(stream):
     data = stream.read()
     sstream = BytesIO(data)
-    if sys.version_info < (3,):
-        return pickle.load(sstream)
     return pickle.load(sstream, encoding="bytes")
 
 libgraph_tool_core.set_pickler(pickler)

src/graph_tool/inference/__init__.py

@@ -153,11 +153,6 @@ Contents
 
 """
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 __all__ = ["minimize_blockmodel_dl",
            "minimize_nested_blockmodel_dl",
            "BlockState",

src/graph_tool/inference/bisection.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 import numpy
 import numpy.random
 import bisect

src/graph_tool/inference/blockmodel.py

@@ -18,14 +18,9 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, \
-    PropertyMap, VertexPropertyMap, conv_pickle_state, Vector_size_t, \
-    Vector_double, group_vector_property, perfect_prop_hash
+    PropertyMap, VertexPropertyMap, Vector_size_t, Vector_double, \
+    group_vector_property, perfect_prop_hash
 from .. generation import condensation_graph, random_rewire, generate_sbm, \
     solve_sbm_fugacities, generate_maxent_sbm
 from .. stats import label_self_loops, remove_parallel_edges, remove_self_loops
@@ -669,7 +664,6 @@ class BlockState(object):
         return state
 
     def __setstate__(self, state):
-        conv_pickle_state(state)
         self.__init__(**state)
 
     def get_block_state(self, b=None, vweight=False, **kwargs):

src/graph_tool/inference/blockmodel_em.py

@@ -18,13 +18,8 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, PropertyMap, \
-    conv_pickle_state, Vector_size_t, Vector_double, group_vector_property
+    Vector_size_t, Vector_double, group_vector_property
 from .. generation import condensation_graph
 from .. stats import label_self_loops
 from .. spectral import adjacency
@@ -128,7 +123,6 @@ class EMBlockState(object):
         return state
 
     def __setstate__(self, state):
-        conv_pickle_state(state)
         g, B, vm, em_s, em_t, wr, prs = state
         self.__init__(g, B)
         g.copy_property(vm, self.vm)

src/graph_tool/inference/layered_blockmodel.py

@@ -18,13 +18,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
-from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, PropertyMap, \
-    conv_pickle_state
+from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, PropertyMap
 import random
 from numpy import *
 import numpy
@@ -405,7 +399,6 @@ class LayeredBlockState(OverlapBlockState, BlockState):
         return state
 
     def __setstate__(self, state):
-        conv_pickle_state(state)
         self.__init__(**state)
 
     def __copy__(self):

src/graph_tool/inference/mcmc.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import Vector_size_t, Vector_double
 
 import numpy

src/graph_tool/inference/minimize.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 import numpy
 from . util import *
 from . mcmc import *

src/graph_tool/inference/nested_blockmodel.py

@@ -18,12 +18,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
-from .. import _degree, _prop, Graph, GraphView, conv_pickle_state
+from .. import _degree, _prop, Graph, GraphView
 from . blockmodel import *
 from . blockmodel import _bm_test
 from . overlap_blockmodel import *
@@ -213,10 +208,6 @@ class NestedBlockState(object):
         return state
 
     def __setstate__(self, state):
-        conv_pickle_state(state)
-        if "kwargs" in state: # backwards compatibility
-            state["state_args"] = state["kwargs"]
-            del  state["kwargs"]
         self.__init__(**state)
 
     def get_bs(self):

src/graph_tool/inference/overlap_blockmodel.py

@@ -18,13 +18,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
-from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, PropertyMap, \
-    conv_pickle_state
+from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, PropertyMap
 
 import random
 from numpy import *
@@ -361,7 +355,6 @@ class OverlapBlockState(BlockState):
         return state
 
     def __setstate__(self, state):
-        conv_pickle_state(state)
         self.__init__(**state)
 
     def get_E(self):

src/graph_tool/inference/partition_centroid.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import _degree, _prop, Graph, GraphView, _get_rng, Vector_size_t
 from . blockmodel import DictState, get_entropy_args, _bm_test
 

src/graph_tool/inference/partition_modes.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import _degree, _prop, Graph, GraphView, _get_rng, Vector_int32_t, \
     Vector_size_t
 from . blockmodel import DictState, get_entropy_args, _bm_test

src/graph_tool/inference/uncertain_blockmodel.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. import _degree, _prop, Graph, GraphView, libcore, _get_rng, \
     PropertyMap, edge_endpoint_property
 

src/graph_tool/inference/util.py

@@ -18,11 +18,6 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 import scipy.special
 from numpy import *
 

src/graph_tool/search/__init__.py

@@ -77,11 +77,6 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-import sys
-if sys.version_info < (3,):
-    range = xrange
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_search")
 

src/graph_tool/spectral/__init__.py

@@ -39,8 +39,6 @@ Contents
 ++++++++
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. import _degree, _prop, Graph, GraphView, _limit_args, Vector_int64_t, \
     Vector_double
 from .. stats import label_self_loops

src/graph_tool/stats/__init__.py

@@ -44,15 +44,12 @@ Contents
 
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_stats")
 
 from .. import _degree, _prop, _get_rng, GraphView, PropertyMap
 from numpy import *
 import numpy
-import sys
 
 __all__ = ["vertex_hist", "edge_hist", "vertex_average", "edge_average",
            "label_parallel_edges", "remove_parallel_edges",

src/graph_tool/topology/__init__.py

@@ -71,8 +71,6 @@ Contents
 
 """
 
-from __future__ import division, absolute_import, print_function
-
 from .. dl_import import dl_import
 dl_import("from . import libgraph_tool_topology")
 
@@ -81,7 +79,7 @@ from .. import _prop, Vector_int32_t, Vector_size_t, _check_prop_writable, \
      EdgePropertyMap, PropertyMap, GraphView, libcore, _get_rng, _degree, \
      perfect_prop_hash, _limit_args
 from .. stats import label_self_loops
-import random, sys, numpy, collections
+import random, numpy, collections