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Commit 77c95cc2 authored by Tiago Peixoto's avatar Tiago Peixoto
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Remove deprecated Python 2 compatibility

parent f758e17e
Pipeline #605 passed with stage
in 430 minutes and 17 seconds
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src/graph_tool/__init__.py
View file @ 77c95cc2
......@@ -89,13 +89,6 @@ Contents
--------
"""
from __future__ import division, absolute_import, print_function
import sys
if sys.version_info < (3,):
range = xrange
else:
unicode = str
__author__ = "Tiago de Paula Peixoto <tiago@skewed.de>"
__copyright__ = "Copyright 2006-2020 Tiago de Paula Peixoto"
__license__ = "GPL version 3 or above"
......@@ -133,16 +126,6 @@ import collections.abc
import itertools
import csv
if sys.version_info < (3,):
import StringIO
def _to_str(x):
if isinstance(x, unicode):
return x.encode("utf8")
return x
else:
def _to_str(x):
return x
from .decorators import _require, _attrs, _limit_args, _copy_func
from inspect import ismethod
......@@ -171,7 +154,7 @@ graph_tool = sys.modules[__name__]
def _prop(t, g, prop):
"""Return either a property map, or an internal property map with a given
name."""
if isinstance(prop, (str, unicode)):
if isinstance(prop, str):
try:
pmap = g.properties[(t, prop)]
except KeyError:
......@@ -224,7 +207,7 @@ def _type_alias(type_name):
if type_name in alias:
return alias[type_name]
if type_name in value_types():
return _to_str(type_name)
return type_name
ma = re.compile(r"vector<(.*)>").match(type_name)
if ma:
t = ma.group(1)
......@@ -264,7 +247,7 @@ def _gt_type(obj):
return "double"
if issubclass(t, numpy.float128):
return "long double"
if issubclass(t, (str, unicode)):
if issubclass(t, str):
return "string"
if issubclass(t, bool):
return "bool"
......@@ -283,7 +266,7 @@ def _converter(val_type):
def convert(val):
return val
elif vtype is str:
return _c_str
return str
else:
def convert(val):
return vtype(val)
......@@ -316,41 +299,6 @@ try:
except BaseException as e:
ArgumentError = type(e)
# Python 2 vs 3 compatibility
if sys.version_info < (3,):
def _c_str(s):
if isinstance(s, unicode):
return s.encode("utf-8")
return str(s)
def _str_decode(s):
return s
else:
def _c_str(s):
return str(s)
def _str_decode(s):
if isinstance(s, bytes):
return s.decode("utf-8")
return s
def get_bytes_io(buf=None):
"""We want BytesIO for python 3, but StringIO for python 2."""
if sys.version_info < (3,):
return StringIO.StringIO(buf)
else:
return io.BytesIO(buf)
def conv_pickle_state(state):
"""State keys may be of type `bytes` if python 3 is being used, but state was
pickled with python 2."""
if sys.version_info >= (3,):
keys = [k for k in state.keys() if type(k) is bytes]
for k in keys:
state[k.decode("utf-8")] = state[k]
del state[k]
################################################################################
# Property Maps
################################################################################
......@@ -782,10 +730,9 @@ class PropertyMap(object):
return state
def __setstate__(self, state):
conv_pickle_state(state)
g = state["g"]
key_type = _str_decode(state["key_type"])
value_type = _str_decode(state["value_type"])
key_type = state["key_type"]
value_type = state["value_type"]
vals = state["vals"]
if state["is_vindex"]:
......@@ -1037,6 +984,7 @@ def group_vector_property(props, value_type=None, vprop=None, pos=None):
>>> print(array([p[g.vertex(0)] for p in props]))
[51 25 8]
"""
g = props[0].get_graph()
vtypes = set()
keys = set()
......@@ -1270,7 +1218,7 @@ def edge_endpoint_property(g, prop, endpoint, eprop=None):
raise ValueError("'eprop' must be of the same value type as 'prop': " +
val_t)
libcore.edge_endpoint(g._Graph__graph, _prop("v", g, prop),
_prop("e", g, eprop), _to_str(endpoint))
_prop("e", g, eprop), endpoint)
return eprop
@_limit_args({"direction": ["in", "out"], "op": ["sum", "prod", "min", "max"]})
......@@ -1323,7 +1271,7 @@ def incident_edges_op(g, direction, op, eprop, vprop=None):
if direction == "in":
g = GraphView(g, reversed=True, skip_properties=True)
libcore.out_edges_op(g._Graph__graph, _prop("e", g, eprop),
_prop("v", g, vprop), _to_str(op))
_prop("v", g, vprop), op)
if vprop is not orig_vprop:
g.copy_property(vprop, orig_vprop)
return orig_vprop
......@@ -1390,7 +1338,7 @@ class InternalPropertyDict(dict):
self.__set_property(t, k, val)
@_limit_args({"t": ["v", "e", "g"]})
@_require("key", str, unicode)
@_require("key", str)
def __set_property(self, t, key, v):
dict.__setitem__(self, (t, key), v)
......@@ -1407,16 +1355,10 @@ class InternalPropertyDict(dict):
self[key] = v = default
return v
if sys.version_info < (3,):
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.iteritems():
self[k] = v
else:
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.items():
self[k] = v
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.items():
self[k] = v
class PropertyDict(object):
......@@ -1475,16 +1417,10 @@ class PropertyDict(object):
def setdefault(self, key, default=None):
self.properties.setdefault((self.t, key), default)
if sys.version_info < (3,):
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.iteritems():
self.properties[(self.t, k)] = v
else:
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.items():
self.properties[(self.t, k)] = v
def update(self, *args, **kwargs):
temp = dict(*args, **kwargs)
for k, v in temp.items():
self.properties[(self.t, k)] = v
def __delitem__(self, key):
del self.properties[(self.t, key)]
......@@ -1517,36 +1453,18 @@ class PropertyDict(object):
if k[0] == self.t:
yield k[1], v
if sys.version_info < (3,):
def has_key(self, key):
return self.properties.has_key((self.t, key))
def iteritems(self):
for k, v in self.properties.iteritems():
if k[0] == self.t:
yield k[1], v
def itervalues(self):
for k, v in self.properties.items():
if k[0] == self.t:
yield v
if sys.version_info < (3,):
def keys(self):
return list(self.iterkeys())
def values(self):
return list(self.itervalues())
def __repr__(self):
temp = dict([(k[1], v) for k, v in self.properties.iteritems() if k[0] == self.t])
return repr(temp)
else:
def keys(self):
return self.iterkeys()
def values(self):
return self.itervalues()
def __repr__(self):
temp = dict([(k[1], v) for k, v in self.properties.items() if k[0] == self.t])
return repr(temp)
def keys(self):
return self.iterkeys()
def values(self):
return self.itervalues()
def __repr__(self):
temp = dict([(k[1], v) for k, v in self.properties.items() if k[0] == self.t])
return repr(temp)
def __getattr__(self, attr):
return self.__getitem__(attr)
......@@ -2696,7 +2614,7 @@ class Graph(object):
provided, the values will be initialized by ``vals``, which should be
sequence or by ``val`` which should be a single value.
"""
prop = EdgePropertyMap(new_edge_property(_c_str(_type_alias(value_type)),
prop = EdgePropertyMap(new_edge_property(_type_alias(value_type),
self.__graph.get_edge_index(),
libcore.any()),
self)
......@@ -2716,7 +2634,7 @@ class Graph(object):
def new_graph_property(self, value_type, val=None):
"""Create a new graph property map of type ``value_type``, and return
it. If ``val`` is not None, the property is initialized to its value."""
prop = GraphPropertyMap(new_graph_property(_c_str(_type_alias(value_type)),
prop = GraphPropertyMap(new_graph_property(_type_alias(value_type),
self.__graph.get_graph_index(),
libcore.any()),
self)
......@@ -2803,7 +2721,7 @@ class Graph(object):
given by ``deg``, which can be any of ``"in"``, ``"out"``, or ``"total"``.
If provided, ``weight`` should be an edge :class:`~graph_tool.EdgePropertyMap`
containing the edge weights which should be summed."""
pmap = self.__graph.degree_map(_to_str(deg), _prop("e", self, weight))
pmap = self.__graph.degree_map(deg, _prop("e", self, weight))
return VertexPropertyMap(pmap, self)
# I/O operations
......@@ -2839,14 +2757,14 @@ class Graph(object):
"""
if isinstance(file_name, (str, unicode)):
if isinstance(file_name, str):
file_name = os.path.expanduser(file_name)
f = open(file_name) # throw the appropriate exception, if not found
if fmt == 'auto' and isinstance(file_name, (str, unicode)):
if fmt == 'auto' and isinstance(file_name, str):
fmt = self.__get_file_format(file_name)
elif fmt == "auto":
fmt = "gt"
if isinstance(file_name, (str, unicode)) and file_name.endswith(".xz"):
if isinstance(file_name, str) and file_name.endswith(".xz"):
try:
file_name = lzma.open(file_name, mode="rb")
except NameError:
......@@ -2859,12 +2777,12 @@ class Graph(object):
ignore_ep = []
if ignore_gp is None:
ignore_gp = []
if isinstance(file_name, (str, unicode)):
props = self.__graph.read_from_file(_c_str(file_name), None,
_c_str(fmt), ignore_vp,
if isinstance(file_name, str):
props = self.__graph.read_from_file(file_name, None,
fmt, ignore_vp,
ignore_ep, ignore_gp)
else:
props = self.__graph.read_from_file("", file_name, _c_str(fmt),
props = self.__graph.read_from_file("", file_name, fmt,
ignore_vp, ignore_ep, ignore_gp)
for name, prop in props[0].items():
self.vertex_properties[name] = VertexPropertyMap(prop, self)
......@@ -2917,31 +2835,31 @@ class Graph(object):
u.graph_properties["_Graph__reversed"] = self.new_graph_property("bool")
u.graph_properties["_Graph__reversed"] = True
if isinstance(file_name, (str, unicode)):
if isinstance(file_name, str):
file_name = os.path.expanduser(file_name)
if fmt == 'auto' and isinstance(file_name, (str, unicode)):
if fmt == 'auto' and isinstance(file_name, str):
fmt = self.__get_file_format(file_name)
elif fmt == "auto":
fmt = "gt"
if fmt == "graphml":
fmt = "xml"
if isinstance(file_name, (str, unicode)) and file_name.endswith(".xz"):
if isinstance(file_name, str) and file_name.endswith(".xz"):
try:
file_name = lzma.open(file_name, mode="wb")
except NameError:
raise NotImplementedError("lzma compression is only available in Python >= 3.3")
props = [(_c_str(name[1]), prop._PropertyMap__map) for name, prop in \
props = [(name[1], prop._PropertyMap__map) for name, prop in \
u.__properties.items()]
if isinstance(file_name, (str, unicode)):
if isinstance(file_name, str):
f = open(file_name, "w") # throw the appropriate exception, if
# unable to open
f.close()
u.__graph.write_to_file(_c_str(file_name), None, _c_str(fmt), props)
u.__graph.write_to_file(file_name, None, fmt, props)
else:
u.__graph.write_to_file("", file_name, _c_str(fmt), props)
u.__graph.write_to_file("", file_name, fmt, props)
# Directedness
......@@ -3269,28 +3187,17 @@ class Graph(object):
def __getstate__(self):
state = dict()
sio = get_bytes_io()
sio = io.BytesIO()
self.save(sio, "gt")
state["blob"] = sio.getvalue()
return state
def __setstate__(self, state):
conv_pickle_state(state)
self.__init__()
blob = state["blob"]
if blob != "":
try:
try:
sio = get_bytes_io(blob)
self.load(sio, "gt")
except IOError:
sio = get_bytes_io(blob)
stream = gzip.GzipFile(fileobj=sio, mode="rb")
self.load(stream, "gt")
except IOError:
sio = get_bytes_io(blob)
stream = gzip.GzipFile(fileobj=sio, mode="rb")
self.load(stream, "xml")
sio = io.BytesIO(blob)
self.load(sio, "gt")
def __get_base(self):
return self
......@@ -3363,7 +3270,7 @@ def load_graph_from_csv(file_name, directed=False, eprop_types=None,
an internal vertex property map with the vertex names.
"""
if isinstance(file_name, (str, unicode)):
if isinstance(file_name, str):
if file_name.endswith(".xz"):
try:
file_name = lzma.open(file_name, mode="rt")
......@@ -3656,10 +3563,6 @@ def _v_ge(v1, v2):
except TypeError:
return False
if sys.version_info < (3,):
def _v_long(self):
return long(int(self))
for Vertex in libcore.get_vlist():
Vertex.__doc__ = _vertex_doc
Vertex.out_neighbors = _out_neighbors
......@@ -3682,8 +3585,6 @@ for Vertex in libcore.get_vlist():
Vertex.__gt__ = _v_gt
Vertex.__le__ = _v_le
Vertex.__ge__ = _v_ge
if sys.version_info < (3,):
Vertex.__long__ = _v_long
_edge_doc = """Edge descriptor.
......
src/graph_tool/all.py
View file @ 77c95cc2
......@@ -22,7 +22,6 @@
Utility module which includes all the sub-modules in graph_tool
"""
from __future__ import division, absolute_import, print_function
import warnings
from graph_tool import *
......
src/graph_tool/centrality/__init__.py
View file @ 77c95cc2
......@@ -44,14 +44,11 @@ Contents
++++++++
"""
from __future__ import division, absolute_import, print_function
from .. dl_import import dl_import
dl_import("from . import libgraph_tool_centrality")
from .. import _prop, ungroup_vector_property, Vector_size_t
from .. topology import shortest_distance
import sys
import numpy
import numpy.linalg
......@@ -514,8 +511,6 @@ def central_point_dominance(g, betweenness):
Examples
--------
.. doctest:: central_point_dominance
>>> g = gt.collection.data["polblogs"]
>>> g = gt.GraphView(g, vfilt=gt.label_largest_component(g))
>>> vp, ep = gt.betweenness(g)
......
src/graph_tool/clustering/__init__.py
View file @ 77c95cc2
......@@ -41,8 +41,6 @@ Contents
++++++++
"""
from __future__ import division, absolute_import, print_function
from .. dl_import import dl_import
dl_import("from . import libgraph_tool_clustering as _gt")
......@@ -54,7 +52,6 @@ from .. stats import vertex_hist
from collections import defaultdict
from numpy import *
from numpy import random
import sys
__all__ = ["local_clustering", "global_clustering", "extended_clustering",
"motifs", "motif_significance"]
......
src/graph_tool/collection/__init__.py
View file @ 77c95cc2
......@@ -264,11 +264,6 @@ Contents
"""
from __future__ import division, absolute_import, print_function
import sys
if sys.version_info < (3,):
range = xrange
import os.path
import textwrap
from .. import load_graph
......
src/graph_tool/collection/konect.py
View file @ 77c95cc2
......@@ -18,28 +18,10 @@
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from __future__ import division, absolute_import, print_function
import sys
if sys.version_info < (3,):
range = xrange
import os.path
import tempfile
if sys.version_info < (3,):
from urllib2 import urlopen, URLError
import shutil
class TemporaryDirectory(object):
def __init__(self, suffix="", prefix="", dir=None):
self.name = tempfile.mkdtemp(suffix, prefix, dir)
def __enter__(self):
return self.name
def __exit__(self, exc, value, tb):
shutil.rmtree(self.name)
else:
from urllib.request import urlopen, URLError
from tempfile import TemporaryDirectory
from urllib.request import urlopen, URLError
from tempfile import TemporaryDirectory
import tarfile
import warnings
import numpy
......
src/graph_tool/correlations/__init__.py
View file @ 77c95cc2
......@@ -39,8 +39,6 @@ Contents
++++++++
"""
from __future__ import division, absolute_import, print_function
from .. dl_import import dl_import
dl_import("from . import libgraph_tool_correlations")
......
src/graph_tool/decorators.py
View file @ 77c95cc2
......@@ -21,11 +21,8 @@
Some useful decorators
"""
from __future__ import division, absolute_import, print_function
import inspect
import functools
import sys
import types
################################################################################
......@@ -33,48 +30,7 @@ import types
# Some useful function decorators which will be used
################################################################################
# exec statement in python 2.7 and exec() function in 3.2 are mutually exclusive
if sys.hexversion > 0x03000000:
def exec_function(source, filename, global_map):
exec(compile(source, filename, "exec"), global_map)
else:
eval(compile("""\
def exec_function(source, filename, global_map):
exec compile(source, filename, "exec") in global_map
""","<exec_function>", "exec"))
if sys.hexversion > 0x03000000:
_wraps = functools.wraps
else:
def _wraps(func):
"""This decorator works like the functools.wraps meta-decorator, but
also preserves the function's argument signature. This uses eval, and is
thus a bit of a hack, but there no better way I know of to do this."""
def decorate(f):
argspec = inspect.getfullargspec(func)
___wrap_defaults = defaults = argspec[-1]
if defaults is not None:
def_string = ["___wrap_defaults[%d]" % d for
d in range(len(defaults))]
def_names = argspec[0][-len(defaults):]
else:
def_string = None
def_names = None
args_call = inspect.formatargspec(argspec[0], defaults=def_names)
argspec = inspect.formatargspec(argspec[0], defaults=def_string)
argspec = argspec.lstrip("(").rstrip(")")
wf = "def %s(%s):\n return f%s\n" % \
(func.__name__, argspec, args_call)
if def_string is not None:
for d in def_string:
wf = wf.replace("'%s'" % d, "%s" % d)
for d in def_names:
wf = wf.replace("'%s'" % d, "%s" % d)
exec_function(wf, __file__, locals())
return functools.wraps(func)(locals()[func.__name__])
return decorate
_wraps = functools.wraps
def _attrs(**kwds):
"""Decorator which adds arbitrary attributes to methods"""
......
src/graph_tool/dl_import.py
View file @ 77c95cc2
......@@ -18,8 +18,6 @@
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from __future__ import division, absolute_import, print_function
import sys
import os.path
......
src/graph_tool/draw/__init__.py
View file @ 77c95cc2
......@@ -66,8 +66,6 @@ Contents
++++++++
"""
from __future__ import division, absolute_import, print_function
from .. import Graph, GraphView, _check_prop_vector, _check_prop_scalar, \
group_vector_property, ungroup_vector_property, infect_vertex_property, \
_prop, _get_rng
......@@ -78,7 +76,6 @@ from .. stats import label_parallel_edges
from .. generation import predecessor_tree, condensation_graph
import numpy.random
from numpy import sqrt
import sys
from .. dl_import import dl_import
dl_import("from . import libgraph_tool_layout")
......
src/graph_tool/draw/cairo_draw.py
View file @ 77c95cc2
......@@ -18,13 +18,6 @@
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from __future__ import division, absolute_import, print_function
import sys
if sys.version_info < (3,):
range = xrange
else:
unicode = str
import os
import warnings
import numpy
......@@ -237,7 +230,7 @@ def shape_from_prop(shape, enum):
prop.fa %= rg[1] - rg[0] + 1
prop.fa += rg[0]