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Tiago Peixoto
graph-tool
Commits
55355c90
Commit
55355c90
authored
Jun 05, 2019
by
Tiago Peixoto
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Small documentation fixes
parent
de0cf806
Changes
3
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doc/demos/inference/_minimization.rst
doc/demos/inference/_minimization.rst
+1
-1
doc/demos/inference/_reconstruction.rst
doc/demos/inference/_reconstruction.rst
+9
-9
doc/demos/inference/_reconstruction_dynamics.rst
doc/demos/inference/_reconstruction_dynamics.rst
+2
-2
No files found.
doc/demos/inference/_minimization.rst
View file @
55355c90
...
...
@@ -21,7 +21,7 @@ network of American football teams, which we load from the
os.chdir("demos/inference")
except FileNotFoundError:
pass
gt.seed_rng(
7
)
gt.seed_rng(
8
)
.. testcode:: football
...
...
doc/demos/inference/_reconstruction.rst
View file @
55355c90
...
...
@@ -191,9 +191,9 @@ Which yields the following output:
.. testoutput:: measured
Posterior probability of edge (11, 36): 0.
890889
...
Posterior probability of non-edge (15, 73): 0.0
56005
...
Estimated average local clustering: 0.572
758 ± 0.003998
...
Posterior probability of edge (11, 36): 0.
742674
...
Posterior probability of non-edge (15, 73): 0.0
20702
...
Estimated average local clustering: 0.572
384 ± 0.003466
...
We have a successful reconstruction, where both ambiguous adjacency
matrix entries are correctly recovered. The value for the average
...
...
@@ -312,9 +312,9 @@ Which yields:
.. testoutput:: measured
Posterior probability of edge (11, 36): 0.
967896
...
Posterior probability of non-edge (15, 73): 0.0
38703
...
Estimated average local clustering: 0.572
129 ± 0.005409
...
Posterior probability of edge (11, 36): 0.
839483
...
Posterior probability of non-edge (15, 73): 0.0
61106
...
Estimated average local clustering: 0.572
476 ± 0.004370
...
The results are very similar to the ones obtained with the uniform model
in this case, but can be quite different in situations where a large
...
...
@@ -441,9 +441,9 @@ The above yields the output:
.. testoutput:: uncertain
Posterior probability of edge (11, 36): 0.
951195
...
Posterior probability of non-edge (15, 73): 0.02
07
02...
Estimated average local clustering: 0.5
38731 ± 0.017645
...
Posterior probability of edge (11, 36): 0.
891889
...
Posterior probability of non-edge (15, 73): 0.02
60
02...
Estimated average local clustering: 0.5
44468 ± 0.021562
...
The reconstruction is accurate, despite the two ambiguous entries having
the same measurement probability. The reconstructed network is visualized below.
...
...
doc/demos/inference/_reconstruction_dynamics.rst
View file @
55355c90
...
...
@@ -143,8 +143,8 @@ The reconstruction can accurately recover the hidden network and the infection p
.. testoutput:: dynamics
Posterior similarity: 0.978
108
...
Inferred infection probability: 0.68
7213 ± 0.054126
Posterior similarity: 0.978
091
...
Inferred infection probability: 0.68
809 ± 0.054207
The figure below shows the reconstructed network and the inferred community structure.
...
...
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