Fix copy_property() to allow copying between non-identical graphs

Now properties can be copied from vertices which are not identical
(e.g. from unfiltered to filtered graphs, etc). This fixes a problem
with graph copying and pruning, where the properties were not correclty
copied.

src/graph/Makefile.am

@@ -24,6 +24,7 @@ libgraph_tool_core_la_SOURCES = \
     graph_filtering.cc \
     graph_io.cc \
     graph_properties.cc \
+    graph_properties_copy.cc \
     graph_properties_group.cc \
     graph_properties_ungroup.cc \
     graph_python_interface.cc \
@@ -46,6 +47,7 @@ libgraph_tool_core_la_include_HEADERS = \
     graph_adaptor.hh \
     graph_wrap.hh \
     graph_filtering.hh \
+    graph_exceptions.hh \
     graph.hh \
     graph_properties.hh \
     graph_properties_group.hh \

src/graph/graph.hh

@@ -30,6 +30,7 @@
 #include <boost/python/dict.hpp>
 #include <boost/mpl/vector.hpp>
 #include "graph_properties.hh"
+#include "graph_exceptions.hh"
 
 namespace graph_tool
 {
@@ -210,36 +211,6 @@ private:
     bool _edge_filter_active;
 };
 
-// Exceptions
-// ==========
-//
-// This is the main exception which will be thrown the outside world, when
-// things go wrong
-
-class GraphException : public std::exception
-{
-    string _error;
-public:
-    GraphException(const string& error) {_error = error;}
-    virtual ~GraphException() throw () {}
-    virtual const char * what () const throw () {return _error.c_str();}
-protected:
-    virtual void SetError(const string& error) {_error = error;}
-};
-
-class IOException : public GraphException
-{
-public:
-    IOException(const string& error): GraphException(error) {}
-};
-
-class ValueException : public GraphException
-{
-public:
-    ValueException(const string& error): GraphException(error) {}
-};
-
-
 } //namespace graph_tool
 
 #endif

src/graph/graph_copy.cc

@@ -91,206 +91,3 @@ GraphInterface::GraphInterface(const GraphInterface& gi, bool keep_ref)
     // filters will be copied in python
 }
 
-//
-// Property map copying
-// ====================
-
-// handle type convertions
-
-// generic types
-template <class Type1, class Type2>
-struct convert
-{
-
-    Type1 operator()(const Type2& v) const
-    {
-        return do_convert(v, is_convertible<Type2,Type1>());
-    }
-
-    Type1 do_convert(const Type2& v, mpl::bool_<true>) const
-    {
-        return Type1(v);
-    }
-
-    Type1 do_convert(const Type2& v, mpl::bool_<false>) const
-    {
-        return specific_convert<Type1,Type2>()(v);
-    }
-
-    template <class T1, class T2>
-    struct specific_convert
-    {
-        T1 operator()(const T2& v) const
-        {
-            throw bad_lexical_cast(); // default action
-        }
-    };
-
-    // specific specializations
-
-    // python::object
-    template <class T1>
-    struct specific_convert<T1,python::object>
-    {
-        T1 operator()(const python::object& v) const
-        {
-            python::extract<Type1> x(v);
-            if (x.check())
-                return x();
-            else
-                throw bad_lexical_cast();
-        }
-    };
-
-    // string
-    template <class T1>
-    struct specific_convert<T1,string>
-    {
-        T1 operator()(const string& v) const
-        {
-            //uint8_t is not char, it is bool!
-            if (is_same<T1, uint8_t>::value)
-                return convert<T1,int>()(lexical_cast<int>(v));
-            else
-                return lexical_cast<Type1>(v);
-        }
-    };
-
-    template <class T2>
-    struct specific_convert<string,T2>
-    {
-        string operator()(const T2& v) const
-        {
-            //uint8_t is not char, it is bool!
-            if (is_same<T2, uint8_t>::value)
-                return lexical_cast<string>(convert<int,T2>()(v));
-            else
-                return lexical_cast<string>(v);
-        }
-    };
-
-    // vectors
-    template <class T1, class T2>
-    struct specific_convert<vector<T1>, vector<T2> >
-    {
-        vector<T1> operator()(const vector<T2>& v) const
-        {
-            vector<T1> v2(v.size());
-            convert<T1,T2> c;
-            for (size_t i = 0; i < v.size(); ++i)
-                v2[i] = c(v[i]);
-            return v2;
-        }
-    };
-
-};
-
-// python::object to string, to solve ambiguity
-template<> template<>
-struct convert<string,python::object>::specific_convert<string,python::object>
-{
-    string operator()(const python::object& v) const
-    {
-        python::extract<string> x(v);
-        if (x.check())
-                return x();
-        else
-            throw bad_lexical_cast();
-    }
-};
-
-
-template <class IteratorSel>
-struct copy_property
-{
-    template <class Graph, class PropertySrc,
-              class PropertyTgt>
-    void operator()(const Graph& tgt, const Graph& src, PropertySrc src_map,
-                    PropertyTgt dst_map) const
-    {
-        typedef typename property_traits<PropertySrc>::value_type val_src;
-        typedef typename property_traits<PropertyTgt>::value_type val_tgt;
-
-        try
-        {
-            convert<val_tgt,val_src> c;
-            typename IteratorSel::template apply<Graph>::type vs, vs_end;
-            typename IteratorSel::template apply<Graph>::type vt, vt_end;
-            tie(vt, vt_end) = IteratorSel::range(tgt);
-            for (tie(vs, vs_end) = IteratorSel::range(src); vs != vs_end; ++vs)
-            {
-                if (vt == vt_end)
-                    throw ValueException("Error copying properties: "
-                                         "graphs not identical");
-                dst_map[*vt] = c(src_map[*vs]);
-                ++vt;
-            }
-        }
-        catch (bad_lexical_cast&)
-        {
-            throw ValueException("property values are not convertible");
-        }
-    }
-};
-
-struct edge_selector
-{
-    template <class Graph>
-    struct apply
-    {
-        typedef typename graph_traits<Graph>::edge_iterator type;
-    };
-
-    template <class Graph>
-    static pair<typename apply<Graph>::type,
-                typename apply<Graph>::type>
-    range(Graph& g)
-    {
-        return edges(g);
-    }
-};
-
-struct vertex_selector
-{
-    template <class Graph>
-    struct apply
-    {
-        typedef typename graph_traits<Graph>::vertex_iterator type;
-    };
-
-    template <class Graph>
-    static pair<typename apply<Graph>::type,
-                typename apply<Graph>::type>
-    range(Graph& g)
-    {
-        return vertices(g);
-    }
-};
-
-typedef mpl::vector<GraphInterface::multigraph_t> unfiltered;
-
-void GraphInterface::CopyVertexProperty(const GraphInterface& src,
-                                        boost::any prop_src,
-                                        boost::any prop_tgt)
-{
-    typedef edge_properties writable_edge_properties;
-
-    run_action<unfiltered>()
-        (*this, bind<void>(copy_property<vertex_selector>(),
-                           _1, ref(src._state->_mg),  _2, _3),
-         vertex_properties(), writable_vertex_properties())
-        (prop_src, prop_tgt);
-}
-
-void GraphInterface::CopyEdgeProperty(const GraphInterface& src,
-                                      boost::any prop_src,
-                                      boost::any prop_tgt)
-{
-    typedef edge_properties writable_edge_properties;
-
-    run_action<unfiltered>()
-        (*this, bind<void>(copy_property<edge_selector>(),
-                           _1, ref(src._state->_mg), _2, _3),
-         edge_properties(), writable_edge_properties())
-        (prop_src, prop_tgt);
-}

src/graph/graph_exceptions.hh

+// graph-tool -- a general graph modification and manipulation thingy
+//
+// Copyright (C) 2007-2011 Tiago de Paula Peixoto <tiago@skewed.de>
+//
+// This program is free software; you can redistribute it and/or
+// modify it under the terms of the GNU General Public License
+// as published by the Free Software Foundation; either version 3
+// of the License, or (at your option) any later version.
+//
+// This program is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License
+// along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+#ifndef GRAPH_EXCEPTIONS_HH
+#define GRAPH_EXCEPTIONS_HH
+#include "config.h"
+#include <string>
+
+// Exceptions
+// ==========
+//
+// This is the main exception which will be thrown the outside world, when
+// things go wrong
+
+namespace graph_tool{
+using namespace std;
+
+class GraphException : public std::exception
+{
+    string _error;
+public:
+    GraphException(const string& error) {_error = error;}
+    virtual ~GraphException() throw () {}
+    virtual const char * what () const throw () {return _error.c_str();}
+protected:
+    virtual void SetError(const string& error) {_error = error;}
+};
+
+class IOException : public GraphException
+{
+public:
+    IOException(const string& error): GraphException(error) {}
+};
+
+class ValueException : public GraphException
+{
+public:
+    ValueException(const string& error): GraphException(error) {}
+};
+
+} // namespace std
+
+#endif // GRAPH_EXCEPTIONS_HH

src/graph/graph_properties.hh

@@ -34,6 +34,7 @@
 #endif
 #include <boost/functional/hash.hpp>
 #include <boost/python/object.hpp>
+#include <boost/python/extract.hpp>
 
 #include <boost/version.hpp>
 #if (BOOST_VERSION >= 104000)
@@ -51,6 +52,7 @@
 #include <boost/bind.hpp>
 
 #include "graph.hh"
+#include "graph_exceptions.hh"
 
 // this file provides general functions for manipulating graph properties
 
@@ -257,6 +259,110 @@ vector<string> get_type_name<TypeSequence,NamedSequence>::_all_names;
 // Extra Property Map Types
 // ========================
 
+
+// handle type convertions
+
+// generic types
+template <class Type1, class Type2>
+struct convert
+{
+    Type1 operator()(const Type2& v) const
+    {
+        return do_convert(v, is_convertible<Type2,Type1>());
+    }
+
+    Type1 do_convert(const Type2& v, mpl::bool_<true>) const
+    {
+        return Type1(v);
+    }
+
+    Type1 do_convert(const Type2& v, mpl::bool_<false>) const
+    {
+        return specific_convert<Type1,Type2>()(v);
+    }
+
+    template <class T1, class T2>
+    struct specific_convert
+    {
+        T1 operator()(const T2& v) const
+        {
+            throw bad_lexical_cast(); // default action
+        }
+    };
+
+    // specific specializations
+
+    // python::object
+    template <class T1>
+    struct specific_convert<T1,python::object>
+    {
+        T1 operator()(const python::object& v) const
+        {
+            python::extract<Type1> x(v);
+            if (x.check())
+                return x();
+            else
+                throw bad_lexical_cast();
+        }
+    };
+
+    // string
+    template <class T1>
+    struct specific_convert<T1,string>
+    {
+        T1 operator()(const string& v) const
+        {
+            //uint8_t is not char, it is bool!
+            if (is_same<T1, uint8_t>::value)
+                return convert<T1,int>()(lexical_cast<int>(v));
+            else
+                return lexical_cast<Type1>(v);
+        }
+    };
+
+    template <class T2>
+    struct specific_convert<string,T2>
+    {
+        string operator()(const T2& v) const
+        {
+            //uint8_t is not char, it is bool!
+            if (is_same<T2, uint8_t>::value)
+                return lexical_cast<string>(convert<int,T2>()(v));
+            else
+                return lexical_cast<string>(v);
+        }
+    };
+
+    // vectors
+    template <class T1, class T2>
+    struct specific_convert<vector<T1>, vector<T2> >
+    {
+        vector<T1> operator()(const vector<T2>& v) const
+        {
+            vector<T1> v2(v.size());
+            convert<T1,T2> c;
+            for (size_t i = 0; i < v.size(); ++i)
+                v2[i] = c(v[i]);
+            return v2;
+        }
+    };
+
+};
+
+// python::object to string, to solve ambiguity
+template<> template<>
+struct convert<string,python::object>::specific_convert<string,python::object>
+{
+    string operator()(const python::object& v) const
+    {
+        python::extract<string> x(v);
+        if (x.check())
+                return x();
+        else
+            throw bad_lexical_cast();
+    }
+};
+
 // the following class wraps a generic property map, so it can be used as a
 // property with a given Key and Value type. The keys and values are converted
 // to the desired Key and Value type, which may cause a performance impact,
@@ -308,22 +414,57 @@ private:
     {
     public:
         ValueConverterImp(PropertyMap pmap): _pmap(pmap) {}
+        typedef typename property_traits<PropertyMap>::value_type val_t;
+        typedef typename property_traits<PropertyMap>::key_type key_t;
 
         virtual Value get(const Key& k)
         {
-            typedef typename property_traits<PropertyMap>::key_type key_t;
-            return boost::get(_pmap, key_t(k));
+            return get_dispatch(_pmap, k,
+                                is_convertible<typename property_traits<PropertyMap>::category,
+                                readable_property_map_tag>());
         }
 
         virtual void put(const Key& k, const Value& val)
         {
-            typedef typename property_traits<PropertyMap>::key_type key_t;
-            typedef typename property_traits<PropertyMap>::value_type val_t;
-            boost::put(_pmap, key_t(k), val_t(val));
+            return  put_dispatch(_pmap, k, _c_put(val),
+                                 is_convertible<typename property_traits<PropertyMap>::category,
+                                                writable_property_map_tag>());
+        }
+
+        template <class PMap>
+        Value get_dispatch(PMap pmap, const typename property_traits<PMap>::key_type& k,
+                           mpl::bool_<true>)
+        {
+            return _c_get(boost::get(pmap, k));
+        }
+        
+        template <class PMap>
+        Value get_dispatch(PMap pmap, const typename property_traits<PMap>::key_type& k,
+                           mpl::bool_<false>)
+        {
+            throw graph_tool::ValueException("Property map is not readable.");
         }
 
+        template <class PMap>
+        void put_dispatch(PMap pmap, const typename property_traits<PMap>::key_type& k,
+                          typename property_traits<PMap>::value_type val,
+                          mpl::bool_<true>)
+        {
+            boost::put(pmap, k, val);
+        }
+
+        template <class PMap>
+        void put_dispatch(PMap pmap, const typename property_traits<PMap>::key_type& k,
+                          typename property_traits<PMap>::value_type val,
+                          mpl::bool_<false>)
+        {
+            throw ValueException("Property map is not writable.");
+        }
+        
     private:
         PropertyMap _pmap;
+        convert<Value, val_t> _c_get;
+        convert<val_t, Value> _c_put;
     };
 
     struct choose_converter

src/graph/graph_properties_copy.cc

+// graph-tool -- a general graph modification and manipulation thingy
+//
+// Copyright (C) 2007-2011 Tiago de Paula Peixoto <tiago@skewed.de>
+//
+// This program is free software; you can redistribute it and/or
+// modify it under the terms of the GNU General Public License
+// as published by the Free Software Foundation; either version 3
+// of the License, or (at your option) any later version.
+//
+// This program is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License
+// along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+#include <boost/mpl/contains.hpp>
+#include <boost/python/extract.hpp>
+
+#include "graph.hh"
+#include "graph_filtering.hh"
+#include "graph_properties.hh"
+
+using namespace std;
+using namespace boost;
+using namespace graph_tool;
+
+//
+// Property map copying
+// ====================
+
+template <class IteratorSel, class PropertyMaps>
+struct copy_property
+{
+    template <class GraphTgt, class GraphSrc, class PropertyTgt>
+    void operator()(const GraphTgt& tgt, const GraphSrc* src,
+                    PropertyTgt dst_map, boost::any prop_src) const
+    {
+        try
+        {
+            typedef typename property_traits<PropertyTgt>::value_type val_tgt;
+            typedef typename IteratorSel::template get_descriptor<GraphSrc>::type src_d;
+
+            DynamicPropertyMapWrap<val_tgt, src_d> src_map(prop_src, PropertyMaps());
+
+            typename IteratorSel::template apply<GraphSrc>::type vs, vs_end;
+            typename IteratorSel::template apply<GraphTgt>::type vt, vt_end;
+            tie(vt, vt_end) = IteratorSel::range(tgt);
+            for (tie(vs, vs_end) = IteratorSel::range(*src); vs != vs_end; ++vs)
+            {
+                if (vt == vt_end)
+                    throw ValueException("Error copying properties: "
+                                         "graphs not compatible");
+                dst_map[*vt] = get(src_map, *vs);
+                ++vt;
+            }
+        }
+        catch (bad_lexical_cast&)
+        {
+            throw ValueException("property values are not convertible");
+        }
+    }
+};
+
+struct edge_selector
+{
+    template <class Graph>
+    struct apply
+    {
+        typedef typename graph_traits<Graph>::edge_iterator type;
+    };
+
+    template <class Graph>
+    struct get_descriptor
+    {
+        typedef typename graph_traits<Graph>::edge_descriptor type;
+    };
+
+    template <class Graph>
+    static pair<typename apply<Graph>::type,
+                typename apply<Graph>::type>
+    range(Graph& g)
+    {
+        return edges(g);
+    }
+};
+
+struct vertex_selector
+{
+    template <class Graph>
+    struct apply
+    {
+        typedef typename graph_traits<Graph>::vertex_iterator type;
+    };
+
+    template <class Graph>
+    struct get_descriptor
+    {
+        typedef typename graph_traits<Graph>::vertex_descriptor type;
+    };
+
+    template <class Graph>