Commit 412aa6f0 authored by Tiago Peixoto's avatar Tiago Peixoto
Browse files

Update references in blockmodel code

parent 1522bd8c
...@@ -914,6 +914,9 @@ def mcmc_sweep(state, beta=1., c=1., dl=False, dense=False, multigraph=False, ...@@ -914,6 +914,9 @@ def mcmc_sweep(state, beta=1., c=1., dl=False, dense=False, multigraph=False,
.. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy .. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy
heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014), heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014),
:doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`. :doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
if state.B == 1: if state.B == 1:
...@@ -1935,6 +1938,9 @@ def minimize_blockmodel_dl(g, deg_corr=True, overlap=False, ...@@ -1935,6 +1938,9 @@ def minimize_blockmodel_dl(g, deg_corr=True, overlap=False,
.. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy .. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy
heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014), heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014),
:doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`. :doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
nested_dl = kwargs.get("nested_dl", False) nested_dl = kwargs.get("nested_dl", False)
......
...@@ -517,6 +517,9 @@ def nested_mcmc_sweep(state, beta=1., c=1., dl=False, sequential=True, verbose=F ...@@ -517,6 +517,9 @@ def nested_mcmc_sweep(state, beta=1., c=1., dl=False, sequential=True, verbose=F
.. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution .. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution
model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`, model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`,
:arxiv:`1310.4377`. :arxiv:`1310.4377`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
rets = [] rets = []
...@@ -835,6 +838,9 @@ def nested_tree_sweep(state, min_B=None, max_B=None, max_b=None, nsweeps=10, ...@@ -835,6 +838,9 @@ def nested_tree_sweep(state, min_B=None, max_B=None, max_b=None, nsweeps=10,
.. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution .. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution
model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`, model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`,
:arxiv:`1310.4377`. :arxiv:`1310.4377`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
dl_ent = kwargs.get("dl_ent", False) dl_ent = kwargs.get("dl_ent", False)
...@@ -1095,6 +1101,9 @@ def init_nested_state(g, Bs, deg_corr=True, overlap=False, dl=False, dense=False ...@@ -1095,6 +1101,9 @@ def init_nested_state(g, Bs, deg_corr=True, overlap=False, dl=False, dense=False
.. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution .. [peixoto-hierarchical-2014] Tiago P. Peixoto, "Hierarchical block structures and high-resolution
model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`, model selection in large networks ", Phys. Rev. X 4, 011047 (2014), :doi:`10.1103/PhysRevX.4.011047`,
:arxiv:`1310.4377`. :arxiv:`1310.4377`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
dl_ent = kwargs.get("dl_ent", False) dl_ent = kwargs.get("dl_ent", False)
...@@ -1407,6 +1416,9 @@ def minimize_nested_blockmodel_dl(g, Bs=None, bs=None, min_B=None, max_B=None, ...@@ -1407,6 +1416,9 @@ def minimize_nested_blockmodel_dl(g, Bs=None, bs=None, min_B=None, max_B=None,
.. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy .. [peixoto-efficient-2014] Tiago P. Peixoto, "Efficient Monte Carlo and greedy
heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014), heuristic for the inference of stochastic block models", Phys. Rev. E 89, 012804 (2014),
:doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`. :doi:`10.1103/PhysRevE.89.012804`, :arxiv:`1310.4378`.
.. [peixoto-model-2014] Tiago P. Peixoto, "Model selection and hypothesis
testing for large-scale network models with overlapping groups",
:arxiv:`1409.3059`.
""" """
dl_ent = kwargs.get("dl_ent", False) dl_ent = kwargs.get("dl_ent", False)
......
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