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graph-tool
graph-tool
Commit 36b30534 authored by Tiago Peixoto's avatar Tiago Peixoto
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Remove obsolete test units 

We will rely on sphinx + docstrings instead.
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src/graph_tool/Makefile.am
View file @ 36b30534
......@@ -18,12 +18,6 @@ graph_tool_run_action_PYTHON = \
graph_tool_run_actiondir = $(MOD_DIR)/run_action
graph_tool_test_PYTHON = \
test/__init__.py \
test/basic.py \
test/properties.py
graph_tool_testdir = $(MOD_DIR)/test
graph_tool_generation_PYTHON = \
generation/__init__.py
graph_tool_generationdir = $(MOD_DIR)/generation
......
src/graph_tool/test/__init__.py deleted 100644 → 0
View file @ 11e04983
#! /usr/bin/env python
# graph_tool.py -- a general graph manipulation python module
#
# Copyright (C) 2007 Tiago de Paula Peixoto <tiago@forked.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
Unit testing routines for graph_tool.
"""
import unittest, basic, properties, io
def run(verbosity=2):
"""Run all tests with desired verbosity."""
unittest.TextTestRunner(verbosity=verbosity).run(basic.suite())
unittest.TextTestRunner(verbosity=verbosity).run(properties.suite())
unittest.TextTestRunner(verbosity=verbosity).run(io.suite())
src/graph_tool/test/basic.py deleted 100644 → 0
View file @ 11e04983
This diff is collapsed.
src/graph_tool/test/io.py deleted 100644 → 0
View file @ 11e04983
#! /usr/bin/env python
# graph_tool.py -- a general graph manipulation python module
#
# Copyright (C) 2007 Tiago de Paula Peixoto <tiago@forked.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
Test graph IO operations
"""
from graph_tool import *
import unittest
from StringIO import StringIO
from basic import gen_suite
from properties import value_types, type_init
class TestGraphIO(unittest.TestCase):
"""Test graph I/O manipulations"""
def setUp(self):
self.g = Graph()
def add_vertices(self):
"""add 10 vertices"""
for i in range(0,10):
v = self.g.add_vertex()
self.assert_(str(v) == str(i))
def clear_vertices(self):
self.g.clear()
def add_edges(self):
"""add 10x10 edges to form a complete graph with self-loops"""
for i in self.g.vertices():
for j in self.g.vertices():
self.g.add_edge(i,j)
def add_properties(self):
"""add a bunch of properties"""
for t in value_types:
# vertex properties
prop = self.g.add_vertex_property("prop_" + t, t)
for v in self.g.vertices():
prop[v] = type_init[t]
# edge properties
prop = self.g.add_edge_property("prop_" + t, t)
for e in self.g.edges():
prop[e] = type_init[t]
# graph properties
self.g.add_graph_property("prop_" + t, t)
self.g.graph_properties["prop_" + t] = type_init[t]
def test_io(self):
"""Testing graph xml io"""
self.add_vertices()
self.add_edges()
self.add_properties()
stream = StringIO()
self.g.save(stream, "xml")
stream.seek(0)
b = Graph()
b.load(stream, "xml")
self.graph_compare(self.g,b)
self.clear_vertices()
def graph_compare(self, g1, g2):
"""Compare two graphs"""
self.assert_(g1.num_vertices() == g2.num_vertices())
self.assert_(g1.num_edges() == g2.num_edges())
for p in g1.graph_properties.keys():
self.assert_(p in g2.graph_properties)
self.assert_(g1.graph_properties[p] == g2.graph_properties[p])
for p in g1.vertex_properties.keys():
self.assert_(p in g2.vertex_properties)
for v in g1.vertices():
self.assert_(g1.vertex_properties[p][v] == \
g2.vertex_properties[p][v])
for p in g1.edge_properties.keys():
self.assert_(p in g2.edge_properties)
for v in g1.edges():
self.assert_(g1.edge_properties[p][v] ==\
g2.edge_properties[p][v])
def suite():
return gen_suite(TestGraphIO)
src/graph_tool/test/properties.py deleted 100644 → 0
View file @ 11e04983
#! /usr/bin/env python
# graph_tool.py -- a general graph manipulation python module
#
# Copyright (C) 2007 Tiago de Paula Peixoto <tiago@forked.de>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
Basic property map manipulation tests
"""
from graph_tool import *
import unittest
from numpy import *
from basic import gen_suite
value_types = ["bool", "int32_t", "int64_t", "double", "long double", "string",
"vector<bool>", "vector<int32_t>", "vector<int64_t>",
"vector<double>", "vector<long double>", "vector<string>",
"python::object"]
type_equivalence = { "bool": int, # bool,
"int32_t": int,
"int64_t": long,
"double": float,
"long double": float,
"string": str,
"vector<bool>": Vector_bool,
"vector<int32_t>": Vector_int32_t,
"vector<int64_t>": Vector_int64_t,
"vector<double>": Vector_double,
"vector<long double>": Vector_long_double,
"vector<string>": Vector_string,
"python::object": dict #any object really
}
type_init = { "bool": True,
"int32_t": int(42),
"int64_t": long(42),
"double": float(3.1416),
"long double": float(3.1416),
"string": "foo",
"vector<bool>": [True, False, True],
"vector<int32_t>": [1, 2, 3, 42],
"vector<int64_t>": [long(1), long(2), long(99999999999999)],
"vector<double>": [1.1, 1.2, 1.3, 1.4] ,
"vector<long double>": [1.1, 1.2, 1.3, 1.4],
"vector<string>": [ "lambs", "stoats", "orangutans",
"breakfast cereals", "lima beans" ],
"python::object": {3:[1,2,3], "foo":(3,2,42) }}
class TestPropertyManipulation(unittest.TestCase):
"""Test property map manipulation"""
def setUp(self):
self.g = Graph()
def add_vertices(self):
# add 10 vertices
for i in range(0,10):
v = self.g.add_vertex()
self.assert_(str(v) == str(i))
def clear_vertices(self):
self.g.clear()
def add_edges(self):
# add 10x10 edges to form a complete graph with self-loops
for i in self.g.vertices():
for j in self.g.vertices():
self.g.add_edge(i,j)
def test_property_manipulation(self):
"""Testing property map creation and manipulation"""
self.add_vertices()
self.add_edges()
# test properties of all types
for t in value_types:
# vertex properties
self.g.add_vertex_property("prop_" + t, t)
self.assertEqual(self.g.vertex_properties["prop_" + t].value_type(),
t)
prop = self.g.vertex_properties["prop_" + t]
for v in self.g.vertices():
prop[v] = type_init[t]
val = prop[v]
self.assertEqual(type(val), type_equivalence[t])
if t.startswith("vector"):
self.assertEqual(list(prop[v]), type_init[t])
else:
self.assertEqual(prop[v], type_init[t])
# edge properties
prop = self.g.add_edge_property("prop_" + t, t)
self.assertEqual(self.g.edge_properties["prop_" + t].value_type(),t)
for e in self.g.edges():
prop[e] = type_init[t]
val = prop[e]
self.assertEqual(type(val), type_equivalence[t])
if t.startswith("vector"):
self.assertEqual(list(prop[e]), type_init[t])
else:
self.assertEqual(prop[e], type_init[t])
# graph properties
self.g.add_graph_property("prop_" + t, t)
self.g.graph_properties["prop_" + t] = type_init[t]
val = self.g.graph_properties["prop_" + t]
self.assertEqual(type(val), type_equivalence[t])
val = self.g.graph_properties["prop_" + t]
if t.startswith("vector"):
self.assertEqual(list(val), type_init[t])
else:
self.assertEqual(val, type_init[t])
# test property deletion
del self.g.vertex_properties["prop_" + t]
self.assertRaises(KeyError,
lambda: self.g.vertex_properties["prop_" + t])
del self.g.edge_properties["prop_" + t]
self.assertRaises(KeyError,
lambda: self.g.edge_properties["prop_" + t])
del self.g.graph_properties["prop_" + t]
self.assertRaises(KeyError,
lambda: self.g.graph_properties["prop_" + t])
self.clear_vertices()
def test_vector_property_manipulation(self):
"""Testing vector property manipulation"""
self.add_vertices()
self.add_edges()
def test_prop(add_func, get_func, set_func, get_desc,
get_prop = lambda p,v: p[v]):
add_func(t)
prop = get_func(t)
try:
prop.__getattribute__("value_type")
self.assertEqual(get_func(t).value_type(), t)
except AttributeError:
pass
v = get_desc()
vec = get_prop(prop,v)
set_func(t,v,type_init[t])
self.assertEqual(get_prop(get_func(t),v), vec)
vec[0] = 42
self.assertEqual(vec[0], 42)
self.assertEqual(get_prop(get_func(t),v)[0], vec[0])
# test numpy integration
try:
prop.__getattribute__("value_type")
if "string" not in str(get_func(t).value_type()):
a = vec.ndarray()
self.assertEqual(len(vec), a.size)
self.assertEqual(vec[0], a[0])
self.assertEqual(list(vec), list(a))
a[0] = 21
self.assertEqual(vec[0], a[0])
self.assertEqual(list(vec), list(a))
except AttributeError:
pass
def set_vertex_prop(t,v,val):
self.g.vertex_properties["prop_" + t][v] = val
def set_edge_prop(t,e,val):
self.g.edge_properties["prop_" + t][e] = val
def set_graph_prop(t,v,val):
self.g.graph_properties["prop_" + t] = val
# test properties of all types
for t in [val for val in value_types if val.startswith("vector")\
and ("string" not in val)]:
# vertex properties
test_prop(lambda t: self.g.add_vertex_property("prop_" + t, t),
lambda t: self.g.vertex_properties["prop_" + t],
set_vertex_prop,
lambda: self.g.vertex(0))
# edge properties
test_prop(lambda t: self.g.add_edge_property("prop_" + t, t),
lambda t: self.g.edge_properties["prop_" + t],
set_edge_prop,
lambda: self.g.edges().next())
# graph properties
test_prop(lambda t: self.g.add_graph_property("prop_" + t, t),
lambda t: self.g.graph_properties["prop_" + t],
set_graph_prop,
lambda: self.g,
lambda p,v: p)
self.clear_vertices()
def suite():
return gen_suite(TestPropertyManipulation)
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